View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_10 (Length: 406)
Name: NF16481_low_10
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Original strand, 46442645 - 46443030
Alignment:
| Q |
16 |
catttacttcatgattatcaaagataatattcttccatgatttttaaatagaccgaatagtagtcaaccaaattttgatattaaccttggtcaaaaaagc |
115 |
Q |
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| T |
46442645 |
catttacttcatgattatcaaagataatattcttccatgatttttaaatagaccgaatagtagtcaaccaaattttgatattaaccttgttcaaaaaagc |
46442744 |
T |
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| Q |
116 |
cacgaaattgttaagtattatccacattcggatatttcaatgcacaagcaattcctaaccataactaaacaccatatcaaacttgaccaaattgaaattc |
215 |
Q |
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| T |
46442745 |
cacgaaattgttaagtattatccacattcggatatttcaatgcacaagtaattcctaaccataactaaacaccatatcaaacttgaccaaattgaaattc |
46442844 |
T |
|
| Q |
216 |
aaaacataaagggtagactaattcctccacaccataacacatcacacatgactgtgaatccattgataaaatgtaatgactaaacaaattaaccattttg |
315 |
Q |
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| T |
46442845 |
aaaacataaagggtagactaattcctccacaccataacacatcacacatgactgtgaatccattgataaaatgtaacgactaaacaaattaaccattttg |
46442944 |
T |
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| Q |
316 |
tacattattcatgaaaccccttacaaactgacannnnnnnnnagaagattcattgtttataccttttcaaaactattgatgatgtc |
401 |
Q |
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| T |
46442945 |
tacattattcatgaaaccccttacaaacagacatttttttttagaagattcattgtttataccttttcaaaactattgataatgtc |
46443030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 46429654 - 46429706
Alignment:
| Q |
48 |
ttccatgatttttaaatagaccgaatagtagtcaaccaaattttgatattaac |
100 |
Q |
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| T |
46429654 |
ttccttgattttcaaatagaccgattagcagtcagccaaattatgatattaac |
46429706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 46430178 - 46430255
Alignment:
| Q |
243 |
cacaccataacacatcaca----catgactgtgaatccattgataaaatgtaatgactaaacaaattaaccattttgt |
316 |
Q |
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||||||||||||||||||| ||||| ||| ||||| || ||||||||||| || |||||||||||| ||| |||| |
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| T |
46430178 |
cacaccataacacatcacacatgcatgattgttaatccgtttataaaatgtaacgagtaaacaaattaatcatcttgt |
46430255 |
T |
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