View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_11 (Length: 405)
Name: NF16481_low_11
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 30629914 - 30630293
Alignment:
| Q |
19 |
gttttggtattggaattggaagaatgaagaatcaaaatccatgtcttgtgggactaaaaaagtggacacaatattttaagtgttatgtttttcttttctt |
118 |
Q |
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| T |
30629914 |
gttttggtattggaattggaagaatgaagattcaaaatccatgtcttgtgggactaaaaaagtggacacaatattttaagcgttatgtttttcttttctt |
30630013 |
T |
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| Q |
119 |
aactactttatgatttggggtgtttggctcctttatatactcattgaaaaaaggaaacatataacgaccaaatagataaagaaaaaatgattaaattagt |
218 |
Q |
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| T |
30630014 |
aactactttatgatttggggtgtttggctcctttatatactcattgaaaaaaggaaacatataacgaccaaatagataaagaaaaaatgattaaattagt |
30630113 |
T |
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| Q |
219 |
tataataaagtgatgttgaaagattctggtcaaggggggatgtgtttggatatccannnnnnnnnatcagtcgtgaattacaaagggttggcacgtgagt |
318 |
Q |
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| T |
30630114 |
tataataaagtgatgttgaaagattctggtcaaggggggatgtgtttggatatcca--ttttttcatcagtcgtgaattacaaagggttggcacgtgagt |
30630211 |
T |
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| Q |
319 |
caaagaaacattatagaaacgtgggcaactcatctattagaaggttcgaaatcaaagggttggccattactcctatgctact |
400 |
Q |
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| T |
30630212 |
caaagaaacattatagaaacgtgggcaactcatctattagaaggttcgaaatcaaagggttggccattactccaatgctact |
30630293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 30624265 - 30624314
Alignment:
| Q |
19 |
gttttggtattggaattggaagaatgaagaatcaaaatccatgtcttgtg |
68 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30624265 |
gttttggtattggatttggaagaatgaagaatcaaaatccatgtcttgtg |
30624314 |
T |
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