View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_12 (Length: 370)
Name: NF16481_low_12
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 4053035 - 4052692
Alignment:
| Q |
12 |
aagaaaagaataattcaaattttctaaaatgagtaaaa--tataaagtnnnnnnnn-ccgagttattattaattaatgccgatcctctcatatctatagg |
108 |
Q |
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| T |
4053035 |
aagaaaagaataattcaaattttctaaaatgagtaaaaaatataaagtaaaaaaaaaccgagttattattaattaatgccgatcctctcatatctatagg |
4052936 |
T |
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| Q |
109 |
aaaggaaaatagaaaagttaaacttggaatcaataatgcaacaagcatatgtttatgttatacaacatccttcctgtccaacaaaaaagggtaagtcaag |
208 |
Q |
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| T |
4052935 |
aaaggaaaatagaaaagttaaacttggaatcaataatgcaacaagcatatgtttatgttatacaacatccttcctgtccaacaaaaaagggtaagtcaag |
4052836 |
T |
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| Q |
209 |
agaatctaatactcatattcttcaatattttcttaccctttgtggtatatatcccacatcatatcacgattacacgtataagatatagaggttgctacga |
308 |
Q |
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| T |
4052835 |
agaatctaatactcatattcttcaatattttcttaccctttgtggtatatatcccacatcatatcacgattacacgtataagatatagaggttgctacga |
4052736 |
T |
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| Q |
309 |
agataaagagaaattgcatcaaaatccgtataccatggtgtttt |
352 |
Q |
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| T |
4052735 |
agataaagagaaattgcatcaaaatccgtataccatggtgtttt |
4052692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 4046594 - 4046540
Alignment:
| Q |
172 |
aacatccttcctgtccaacaaaaaagggtaagtcaagagaatctaatactcatat |
226 |
Q |
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| T |
4046594 |
aacatccttcttgtccaacaaaaaagggtaagtcaagataatctaatactcatat |
4046540 |
T |
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