View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_14 (Length: 348)
Name: NF16481_low_14
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 3876740 - 3876631
Alignment:
| Q |
140 |
gccactaatataagttggtgcaattagggttcatctgcatctacctcaaatccatattcatccctaattccatcttcatctttcccgtgtaataaaattt |
239 |
Q |
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| T |
3876740 |
gccactaatataagttggtgcaattagggttcatctgcatctacctcaaatccatattcatccctaattccatcttcatctttcccgtgtaataaaattt |
3876641 |
T |
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| Q |
240 |
attgggattt |
249 |
Q |
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| T |
3876640 |
attgggattt |
3876631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 3876865 - 3876774
Alignment:
| Q |
14 |
attaacaatattgaggtaagtttgttcctttcgtgagttggtcgtttgaaagggacacttgaccaacgaaaatacagacgtgaatgcgagctt |
106 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
3876865 |
attaacaatattgaggtaagttcgtccctttcgtgagttggtcgtttgaaagggacacttggccaatg-aaatacagacgtgaatgcgagctt |
3876774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 3876641 - 3876582
Alignment:
| Q |
274 |
tattgggatttacattgnnnnnnntgtgttattgaaaaatatggaatgcaagtaaatcat |
333 |
Q |
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| T |
3876641 |
tattgggatttacattgaaaaaaatgtgttattgaaaaatatggaatgcaagtaaatcat |
3876582 |
T |
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