View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_16 (Length: 311)
Name: NF16481_low_16
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 39583607 - 39583495
Alignment:
| Q |
1 |
agtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcctgatcaatagaaaaggaaacaactgcggcgtgttttac |
100 |
Q |
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| T |
39583607 |
agtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcctgatcaatagaaaaggaaacaactgcggcgtgttttac |
39583508 |
T |
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| Q |
101 |
ttcttttctgcta |
113 |
Q |
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| T |
39583507 |
ttcttttctgcta |
39583495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 181 - 292
Target Start/End: Complemental strand, 39583427 - 39583316
Alignment:
| Q |
181 |
atgaacttctgaagtctcaatataagcatttctgatctctagtttttctttccctttcaaaatattggttttcacagcatttaccataaatgcttatatg |
280 |
Q |
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| T |
39583427 |
atgaacttctgaagtctcagtataagcatttctgatctctagtttttctttccctttcaaaatattggttttcgcagcatttaccataaatgcttatatg |
39583328 |
T |
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| Q |
281 |
gcaagtgttgac |
292 |
Q |
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| T |
39583327 |
gcaagtgttgac |
39583316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39616607 - 39616697
Alignment:
| Q |
1 |
agtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcc---tgatcaatagaaaaggaaacaactgc |
88 |
Q |
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| T |
39616607 |
agtgatacagatactgatattgatacggaaactgaaagtactggaaggacaaatgaagttcctgatgatcaatagaaaaggaaacagctgc |
39616697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 39627337 - 39627425
Alignment:
| Q |
3 |
tgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcctgat---caatagaaaaggaaacaactgc |
88 |
Q |
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|||||| |||||||||| ||||| ||||| ||||||||| |||||||||| ||||||| |||| ||||||||||||||||| |||| |
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| T |
39627337 |
tgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctgc |
39627425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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