View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16481_low_18 (Length: 298)

Name: NF16481_low_18
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16481_low_18
NF16481_low_18
[»] chr2 (10 HSPs)
chr2 (18-159)||(31528494-31528635)
chr2 (18-159)||(13710174-13710315)
chr2 (18-153)||(40018082-40018218)
chr2 (18-144)||(31626654-31626779)
chr2 (49-159)||(23673345-23673455)
chr2 (18-161)||(16295002-16295145)
chr2 (49-165)||(36327061-36327177)
chr2 (50-159)||(29436003-29436113)
chr2 (68-159)||(24384925-24385018)
chr2 (49-159)||(32074156-32074268)
[»] chr5 (12 HSPs)
chr5 (18-159)||(15532200-15532341)
chr5 (18-157)||(15542384-15542523)
chr5 (18-156)||(33575193-33575331)
chr5 (48-160)||(22159881-22159993)
chr5 (55-159)||(26711464-26711567)
chr5 (55-159)||(26981201-26981304)
chr5 (18-162)||(7649939-7650084)
chr5 (18-159)||(34405951-34406094)
chr5 (48-157)||(11988864-11988975)
chr5 (37-160)||(14616428-14616551)
chr5 (41-159)||(21680602-21680721)
chr5 (41-159)||(2499762-2499882)
[»] chr3 (8 HSPs)
chr3 (18-159)||(11138570-11138711)
chr3 (18-159)||(22626312-22626453)
chr3 (18-159)||(39563510-39563651)
chr3 (50-105)||(20536390-20536445)
chr3 (49-159)||(46731589-46731699)
chr3 (41-159)||(19869223-19869343)
chr3 (63-159)||(13979634-13979730)
chr3 (49-102)||(35366510-35366562)
[»] chr6 (12 HSPs)
chr6 (18-159)||(13017189-13017330)
chr6 (18-159)||(22221826-22221967)
chr6 (18-159)||(22247661-22247802)
chr6 (18-159)||(14790721-14790864)
chr6 (37-162)||(1838598-1838723)
chr6 (18-166)||(14795749-14795899)
chr6 (49-151)||(19664674-19664776)
chr6 (49-159)||(32427435-32427544)
chr6 (22-159)||(11410988-11411127)
chr6 (49-128)||(15535190-15535270)
chr6 (18-49)||(30978321-30978352)
chr6 (115-160)||(7559849-7559894)
[»] chr4 (8 HSPs)
chr4 (18-159)||(12172076-12172218)
chr4 (18-159)||(2541988-2542128)
chr4 (18-159)||(647203-647346)
chr4 (18-159)||(650475-650618)
chr4 (174-289)||(42362196-42362307)
chr4 (43-159)||(19929126-19929242)
chr4 (92-159)||(24150961-24151028)
chr4 (92-159)||(38283247-38283314)
[»] chr7 (11 HSPs)
chr7 (18-159)||(23759609-23759749)
chr7 (18-153)||(11279595-11279730)
chr7 (23-159)||(294969-295106)
chr7 (18-151)||(46846320-46846453)
chr7 (18-161)||(33313099-33313241)
chr7 (18-159)||(36222309-36222450)
chr7 (18-159)||(6967250-6967393)
chr7 (19-159)||(17866353-17866495)
chr7 (37-159)||(24783531-24783654)
chr7 (49-160)||(3861906-3862016)
chr7 (44-160)||(17857879-17857996)
[»] scaffold0440 (1 HSPs)
scaffold0440 (18-159)||(9967-10109)
[»] scaffold0264 (1 HSPs)
scaffold0264 (18-159)||(24185-24326)
[»] chr8 (5 HSPs)
chr8 (18-159)||(12575300-12575440)
chr8 (18-159)||(14418568-14418707)
chr8 (72-159)||(453863-453951)
chr8 (41-159)||(9467309-9467429)
chr8 (72-145)||(15928472-15928544)
[»] chr1 (10 HSPs)
chr1 (20-159)||(13496092-13496232)
chr1 (18-159)||(10765022-10765165)
chr1 (18-159)||(13493365-13493508)
chr1 (49-158)||(1936764-1936873)
chr1 (21-159)||(49716595-49716735)
chr1 (37-159)||(32505857-32505983)
chr1 (72-156)||(49720129-49720214)
chr1 (72-159)||(34552438-34552525)
chr1 (71-159)||(50196715-50196804)
chr1 (92-163)||(37183627-37183699)
[»] scaffold0068 (1 HSPs)
scaffold0068 (41-159)||(33730-33849)
[»] scaffold0363 (1 HSPs)
scaffold0363 (18-159)||(11-150)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 31528494 - 31528635
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31528494 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacaaatttttt 31528593  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  31528594 attacttcgatcgaatttggttcacttgccaaatatctatca 31528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 13710174 - 13710315
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    |||||||| |||  |||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |||| || ||||    
T  13710174 actcaacttcctcaggcatcaatataaattttatacatcctttttaataatgaaattgctaagtagaagttaaatacagttctcgtaaaaacgaa-tttt 13710272  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  13710273 tattacttcgattgaatttggttcacttgccaaatatctatca 13710315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 40018082 - 40018218
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||| |||| ||| |||||| || |||| ||| ||||||||||||    
T  40018082 actcaactgcctagggcatcaatataaattttatacatcctttttaataaaaaaattgccaagtcgaagttaaatgcactccttgtgaaaacaaattttt 40018181  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatat 153  Q
    |||||||||||| |||||||||||||||| |||||||    
T  40018182 tattacttcgattgaatttggttcacttgccaaatat 40018218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 31626654 - 31626779
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||||| | ||||| || ||||    
T  31626654 actcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagtt-aatacagtcctcattgaaacgaa-tttt 31626751  T
Q  117 tattacttcgatcgaatttggttcactt 144  Q
    |||||||||||| |||||||||||||||    
T  31626752 tattacttcgattgaatttggttcactt 31626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 23673455 - 23673345
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatttggttcacttgtc 147  Q
    ||||||||||||| |||| ||||||| | ||||||||||||  || ||||||||||| || ||||| |||||||||||||| |  ||||||||||||| |    
T  23673455 atacatcctttttgataaagaaattgttgagtagaaattaacaacggtcctcgtggatacgaatttatttattacttcgatag-ttttggttcacttgcc 23673357  T
Q  148 aaatatctatca 159  Q
    |||| |||||||    
T  23673356 aaatctctatca 23673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 16295002 - 16295145
Alignment:
Q  18 actcaactgcctagggcaccaatataaa-tttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtgga-aacaaatttt 115  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||  |||| ||||||||| ||||||||||||  || |||||||||||    |  || |    
T  16295002 actcaactgcctagggcatcaatataaattttatacatcc-tttcgataacgaaattgctgagtagaaattaacaacggtcctcgtggatttgatcttat 16295100  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatcatt 161  Q
    ||||||||||||| |  ||||||||||||| ||||| |||||||||    
T  16295101 ttattacttcgatag-ttttggttcacttgccaaatctctatcatt 16295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 36327061 - 36327177
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatttggttcacttgtc 147  Q
    ||||||| ||||| |||| ||||||||  ||||||| ||||  || ||||||||||| || ||||| |||||||||||||| |  ||||||||||||| |    
T  36327061 atacatcttttttgataaagaaattgcagagtagaagttaacaacggtcctcgtggatacgaatttatttattacttcgatagt-tttggttcacttgcc 36327159  T
Q  148 aaatatctatcattactc 165  Q
    ||||||||||||| ||||    
T  36327160 aaatatctatcatgactc 36327177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 29436003 - 29436113
Alignment:
Q  50 tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttttattacttcgatcgaatttggttcacttgtca 148  Q
    |||||||||| |  ||| ||| ||||||||||||||||||  || ||||||||||| || || ||| ||||||||||||| |  |||| | |||||||||    
T  29436003 tacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattattacttcgatagtttttgatacacttgtca 29436102  T
Q  149 aatatctatca 159  Q
    | |||||||||    
T  29436103 attatctatca 29436113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 24385018 - 24384925
Alignment:
Q  68 gaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatt---ttttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||||||||||||  |||||| ||||| | || ||||   ||||||||||||||| |  |||||| |||||| |||||||||||||    
T  24385018 gaaattgctaagtagaaattaataacagtcatcgtgaatacgaatttaattttattacttcgatag-ttttggtacacttgccaaatatctatca 24384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 32074268 - 32074156
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttatta---cttcgatcgaatttggttcacttg 145  Q
    |||||||||||  | |||||||||| |||||||||||||||  |||  | ||||||| |||||||| ||||||   |||||||  | ||||||  |||||    
T  32074268 atacatcctttacattaatgaaatttctaagtagaaattaacaacaaccatcgtggatacaaatttattattattacttcgata-attttggtatacttg 32074170  T
Q  146 tcaaatatctatca 159  Q
    ||||||||||||||    
T  32074169 tcaaatatctatca 32074156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 15532341 - 15532200
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  15532341 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaatttttt 15532242  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  15532241 attacttcgatcgaatttggttcacatgccaaatatctatca 15532200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 15542523 - 15542384
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  15542523 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgttaagtagaagttaaatacagtcctcgtggaaacgaatttttt 15542424  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctat 157  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  15542423 attacttcgatcgaatttggttcacttgccaaatatctat 15542384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 33575193 - 33575331
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||| ||||||||    
T  33575193 actcaactgcctagggcaccaatataaatttatacatcctttttaataataaaattgctaaatagaagttaaatacagtcctcgtgaaaacgaatttttt 33575292  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatcta 156  Q
    ||||||||||| |||||||||||||||| ||||| ||||    
T  33575293 attacttcgattgaatttggttcacttgccaaatttcta 33575331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 22159881 - 22159993
Alignment:
Q  48 tatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtc 147  Q
    |||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22159881 tatacatcctttttgacaaagaaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggtacacttgtc 22159980  T
Q  148 aaatatctatcat 160  Q
    |||||||||||||    
T  22159981 aaatatctatcat 22159993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 26711567 - 26711464
Alignment:
Q  55 cctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtcaaatatc 154  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||    
T  26711567 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatatc 26711469  T
Q  155 tatca 159  Q
    |||||    
T  26711468 tatca 26711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 26981304 - 26981201
Alignment:
Q  55 cctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtcaaatatc 154  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||    
T  26981304 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatatc 26981206  T
Q  155 tatca 159  Q
    |||||    
T  26981205 tatca 26981201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 7650084 - 7649939
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-t 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||| | ||||||||||||  || ||||||||| | || ||||| |    
T  7650084 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgttgagtagaaattaacaacggtcctcgtgaatacgaatttat 7649985  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatcatta 162  Q
    ||||||||||||| |  ||||||||||||||||||| ||||||||||    
T  7649984 ttattacttcgatag-ttttggttcacttgtcaaatctctatcatta 7649939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 34405951 - 34406094
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaatttt 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||| ||||| || || |||     
T  34405951 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtccttgtggatacgaacttta 34406050  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| |||||||||||||    
T  34406051 ttactacttcgatagcttttggtacacttgccaaatatctatca 34406094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 11988975 - 11988864
Alignment:
Q  48 tatacatcctttttaataatgaaattgctaagta--gaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttg 145  Q
    ||||| ||||| ||| ||||||||||||||||||  ||| ||||  || || ||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  11988975 tatacgtccttattactaatgaaattgctaagtatagaagttaagaacggttctcgtggaaacgaattatttattacttcgattgaatttgattcacttg 11988876  T
Q  146 tcaaatatctat 157  Q
    ||||||||||||    
T  11988875 tcaaatatctat 11988864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 14616551 - 14616428
Alignment:
Q  37 caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaattt 135  Q
    ||||||||||| ||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || ||||| |||||||||||||| |  |||    
T  14616551 caatataaattcatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaatttatttattacttcgatag-tttt 14616453  T
Q  136 ggttcacttgtcaaatatctatcat 160  Q
    |||||||||| ||||| ||||||||    
T  14616452 ggttcacttgccaaatctctatcat 14616428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 21680602 - 21680721
Alignment:
Q  41 ataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaa-ttttttattacttcgatcgaatttggt 138  Q
    ||||||||| |||||||||| |  ||| ||| ||||||||||||||||||  || ||||||||||| ||||| ||| ||| ||||||||| |  ||||||    
T  21680602 ataaatttagtacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacaaactttattactacttcgatag-ttttggt 21680700  T
Q  139 tcacttgtcaaatatctatca 159  Q
     |||||| |||||||||||||    
T  21680701 acacttgccaaatatctatca 21680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 2499882 - 2499762
Alignment:
Q  41 ataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttttattacttcgatcgaatttggt 138  Q
    ||||||||| |||||||||| |  ||| ||| ||||||||||||||||||  || ||||||||||| || || ||| ||| |||||||||    ||||||    
T  2499882 ataaatttactacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactacttcgatatcttttggt 2499783  T
Q  139 tcacttgtcaaatatctatca 159  Q
     |||||| |||||||||||||    
T  2499782 acacttgccaaatatctatca 2499762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 11138711 - 11138570
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  11138711 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaacttttt 11138612  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  11138611 attacttcgatcgaatttggttcacttgccaaatatctatca 11138570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 22626453 - 22626312
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  22626453 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaacttttt 22626354  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  22626353 attacttcgatcgaatttggttcacttgccaaatatctatca 22626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 39563651 - 39563510
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  39563651 actcaactgcctagggcactaatataaattttacacatccttttttataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttt 39563553  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||| ||| |||||||||||||||| |||||||||||||    
T  39563552 tattactttgattgaatttggttcacttgccaaatatctatca 39563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 20536445 - 20536390
Alignment:
Q  50 tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtgga 105  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  20536445 tacatcctttttaataatgaaatttctaagtagaagttaaatacagtcctcgtgga 20536390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 46731589 - 46731699
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatttggttcacttgtc 147  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||  || ||||||||||| |||||||| || ||||||||||| |  ||| ||||||||| |    
T  46731589 atacatcctttttgataaagaaattgctgagtagaagttaacaacggtcctcgtggatacaaatttattcattacttcgatag-tttttgttcacttgcc 46731687  T
Q  148 aaatatctatca 159  Q
    |||| |||||||    
T  46731688 aaatctctatca 46731699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 19869223 - 19869343
Alignment:
Q  41 ataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttttattacttcgatcgaatttggt 138  Q
    ||||||||| |||||||||| |  ||| ||| ||||||||||||||||||  || ||||||||||| || || ||| ||| ||||| ||| || ||| ||    
T  19869223 ataaatttactacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactactttgatagattttagt 19869322  T
Q  139 tcacttgtcaaatatctatca 159  Q
     |||||| |||||||||||||    
T  19869323 acacttgccaaatatctatca 19869343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 13979634 - 13979730
Alignment:
Q  63 ataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||| ||||||||| ||||||||||||   |||||||||||||  | | ||| |||||||||||||| |  ||||||||||||| ||||| |||||||    
T  13979634 ataaagaaattgctgagtagaaattaacagcagtcctcgtggattcgattttatttattacttcgatag-ttttggttcacttgccaaatctctatca 13979730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 35366510 - 35366562
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgt 102  Q
    |||||||||||||| ||||||||||||||||||||| ||||  || ||||||||    
T  35366510 atacatccttttta-taatgaaattgctaagtagaagttaacaacggtcctcgt 35366562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 13017330 - 13017189
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||||    
T  13017330 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatatagtcctcgtggaaacgaacttttt 13017231  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  13017230 attacttcgatcgaatttggttcacttgccaaatatctatca 13017189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 22221826 - 22221967
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||||||||||| ||||| ||    
T  22221826 actcaactgcctagggcaccaataataatttatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttatt 22221925  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    | ||||||||| |  |||||| |||||| ||||| |||||||    
T  22221926 actacttcgatagcttttggtacacttgccaaatttctatca 22221967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 22247661 - 22247802
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||||||||||| ||||| ||    
T  22247661 actcaactgcctagggcaccaataataatttatacatcctttttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttatt 22247760  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    | ||||||||| |  |||||| |||||| ||||| |||||||    
T  22247761 actacttcgatagcttttggtacacttgccaaatttctatca 22247802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 14790721 - 14790864
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaatttt 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || || |||     
T  14790721 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaacttta 14790820  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| |||||||||||||    
T  14790821 ttactacttcgatagcttttggtacacttgccaaatatctatca 14790864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 1838598 - 1838723
Alignment:
Q  37 caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaattt 135  Q
    ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||| ||||| || ||||| ||||||||||||||  | |||    
T  1838598 caatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtccttgtggatacgaatttatttattacttcgat-aatttt 1838696  T
Q  136 ggttcacttgtcaaatatctatcatta 162  Q
    |||||||||| ||||| ||||||||||    
T  1838697 ggttcacttgccaaatctctatcatta 1838723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 14795749 - 14795899
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgt-ggaaacaaatttt 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || |||||||| || |  || |||     
T  14795749 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtaggtacgaacttta 14795848  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatcattactca 166  Q
    ||| ||||||||| |  |||||| |||||| ||||||||||||| ||||||    
T  14795849 ttactacttcgatagcttttggtacacttgccaaatatctatcagtactca 14795899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 19664776 - 19664674
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatttggttcacttgtc 147  Q
    ||||||||||||| |||| ||||||| | ||||||||| ||  || ||||||||||| |||||||| |||||||||||||| |  ||||||||||||| |    
T  19664776 atacatcctttttgataaagaaattgttgagtagaaataaacaacggtcctcgtggatacaaatttatttattacttcgatag-ttttggttcacttgcc 19664678  T
Q  148 aaat 151  Q
    ||||    
T  19664677 aaat 19664674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 32427435 - 32427544
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatttggttcacttgtc 147  Q
    ||||||| ||||| |||| ||||||||| ||||||| ||||  || |||||||| || |||||||| |||||||||||||| |  ||||||||||||  |    
T  32427435 atacatcttttttgataaagaaattgctgagtagaa-ttaacaacggtcctcgtagatacaaatttatttattacttcgatagt-tttggttcacttacc 32427532  T
Q  148 aaatatctatca 159  Q
    ||||||||||||    
T  32427533 aaatatctatca 32427544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 11410988 - 11411127
Alignment:
Q  22 aactgcctagggca-ccaatataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttt-tta 118  Q
    |||||||||||||| || ||| ||||||| |||||||||| |  ||| ||| ||||||||||||||||||  |  || |||||||| || || ||| |||    
T  11410988 aactgcctagggcaacccata-aaatttactacatcctttattttaacgaacttgctaagtagaaattaacaatggtactcgtggatacgaactttatta 11411086  T
Q  119 ttacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||| |  |||||| |||||||||| |||||||||    
T  11411087 ttacttcgatagtttttggtacacttgtcaattatctatca 11411127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 15535190 - 15535270
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgat 128  Q
    ||||||||||||| |||| ||||| ||| ||||||| ||||  || ||||||||||| || ||||| ||||||||||||||    
T  15535190 atacatccttttttataaagaaatggctgagtagaagttaacaacggtcctcgtggatacgaatttatttattacttcgat 15535270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 30978352 - 30978321
Alignment:
Q  18 actcaactgcctagggcaccaatataaattta 49  Q
    ||||||||||||||||||||||||||||||||    
T  30978352 actcaactgcctagggcaccaatataaattta 30978321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 7559894 - 7559849
Alignment:
Q  115 tttattacttcgatcgaatttggttcacttgtcaaatatctatcat 160  Q
    ||||||||||||||| ||||| || |||||||||||||| ||||||    
T  7559894 tttattacttcgatcaaatttagtacacttgtcaaatatttatcat 7559849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 12172076 - 12172218
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||    
T  12172076 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgatcttttt 12172175  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  12172176 tattacttcgatcgaatttggttcacttgccaaatatctatca 12172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 2541988 - 2542128
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||| |  || || |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||| |||    
T  2541988 actcaactgcctagggcaccattg-aatttaatacatcctttttaataatgaaattgctcagtagaagttaaatacagtcctcgtggatacgaattattt 2542086  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||| || |||||| |||||| |||||||||||||    
T  2542087 attacttcgattgactttggtacacttgccaaatatctatca 2542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 647346 - 647203
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaa-tttt 115  Q
    |||||| |||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| ||||| |||     
T  647346 actcaaatgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacaaacttta 647247  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| ||||||| |||||    
T  647246 ttactacttcgatagcttttggtacacttgccaaatatttatca 647203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 650618 - 650475
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaa-tttt 115  Q
    |||||| |||||||||||  ||||||||||||||||||||||||| |||  ||||||||  ||||||||||||  || ||||||||||| ||||| |||     
T  650618 actcaaatgcctagggcaatcaatataaatttatacatcctttttgatatagaaattgccgagtagaaattaacaacggtcctcgtggatacaaacttta 650519  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| ||||||| |||||    
T  650518 ttactacttcgatagcttttggtacacttgccaaatatttatca 650475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 42362307 - 42362196
Alignment:
Q  174 ctattttctggtttgccatttgattatgacacaagtaatatggtgtgaaatattttattaaatccagtttcatcttctataaatcttcttgtcttgcatg 273  Q
    ||||||||| |||||||||| ||||||||||| ||||   || ||||| || |||||| ||||| ||||||||||| ||||||||| |||||||||||||    
T  42362307 ctattttctagtttgccattggattatgacactagta---tgctgtgagatgttttat-aaatcaagtttcatcttttataaatctacttgtcttgcatg 42362212  T
Q  274 tttcttgaagaataat 289  Q
    |||||| |||| ||||    
T  42362211 tttcttaaagactaat 42362196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 19929126 - 19929242
Alignment:
Q  43 aaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcac 142  Q
    ||||||| ||||||||| |   || ||| ||||||||||||||||||  || ||||||||||||  | |||| ||| ||||||||| |   ||||| |||    
T  19929126 aaatttacacatcctttatgtcaaagaacttgctaagtagaaattaacaacggtcctcgtggaacgatatttattactacttcgatagttattggtacac 19929225  T
Q  143 ttgtcaaatatctatca 159  Q
    ||| |||||||||||||    
T  19929226 ttgccaaatatctatca 19929242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 24150961 - 24151028
Alignment:
Q  92 acagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||| |||||  |||||| ||||||||| | ||||||| |||||| |||| ||||||||    
T  24150961 acagtcctcgtgggaacaatatttttactacttcgatagtatttggtacacttgccaaaaatctatca 24151028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 38283314 - 38283247
Alignment:
Q  92 acagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||| |||||  |||||| ||||||||| | ||||||| |||||| |||| ||||||||    
T  38283314 acagtcctcgtgggaacaatatttttactacttcgatagtatttggtacacttgccaaaaatctatca 38283247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 23759749 - 23759609
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||| || |||||    
T  23759749 actcaactgcctagggcaccaatataaatttatacatcctttttaa-aatgaatttgctaagtagaagttaaatacagtcctcgtagaaacgaacttttt 23759651  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  23759650 attacttcgattgaatttggttcacttgccaaatatctatca 23759609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 11279595 - 11279730
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  11279595 actcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatatagtccttgtggaaacaaa-tttt 11279693  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatat 153  Q
    |||||||||||| |||||||||||||||| |||||||    
T  11279694 tattacttcgattgaatttggttcacttgccaaatat 11279730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 294969 - 295106
Alignment:
Q  23 actgcctagggcaccaatataaatttat-acatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttatta 121  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  294969 actgcctcgggcatcaatataaatttattacatcctttttaataatgaaattgctaagtagaagttaaatacagtcctcgtggacacaaattttttatta 295068  T
Q  122 cttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||| |||||||||||||||| |||||||| ||||    
T  295069 cttcgattgaatttggttcacttgccaaatatccatca 295106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 46846453 - 46846320
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  46846453 actcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacata-tttt 46846355  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaat 151  Q
    |||||||||||| |||| || |||||||| |||||    
T  46846354 tattacttcgattgaatctgattcacttgccaaat 46846320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33313099 - 33313241
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||     
T  33313099 actcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagttaa-tacagtcctcgtagaaacgaatttt- 33313196  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatcatt 161  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||    
T  33313197 tattacttcgattgaatttgtttcacttctcaaatatctatcatt 33313241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 36222450 - 36222309
Alignment:
Q  18 actcaactgcctagggcaccaatataaattt-atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttt 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| || ||||    
T  36222450 actcaactgcctagggcaccaatataaattttatacatcctttttaataatgaaattgctacgtagaaattaaatacaatcctcgtggtaacgaa-tttt 36222352  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||| || |||||||||||| ||| |||||||| ||||    
T  36222351 tattacttcaattgaatttggttcatttgccaaatatccatca 36222309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 6967250 - 6967393
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaatttt 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || || |||     
T  6967250 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaacttta 6967349  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| |||||||||||||    
T  6967350 ttactacttcgatagcttttggtacacttgccaaatatctatca 6967393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 17866495 - 17866353
Alignment:
Q  19 ctcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttt 116  Q
    |||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || || ||| |    
T  17866495 ctcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaactttat 17866396  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    || ||||||||| |  |||||| |||||| |||||||||||||    
T  17866395 tactacttcgatagcttttggtacacttgccaaatatctatca 17866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 24783531 - 24783654
Alignment:
Q  37 caatataaatttatacatcctttttaat-aatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-tttattacttcgatcgaatt 134  Q
    ||||||||||||||||||||||||| || || ||||||||  ||||||||||||  || ||||||||||| |||||||| |||||||||||||| |  ||    
T  24783531 caatataaatttatacatcctttttgataaaagaaattgccgagtagaaattaacaacggtcctcgtggatacaaatttatttattacttcgatag-ttt 24783629  T
Q  135 tggttcacttgtcaaatatctatca 159  Q
    ||||||||||||||||| |||||||    
T  24783630 tggttcacttgtcaaatctctatca 24783654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 3862016 - 3861906
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtca 148  Q
    |||||||||||| ||||||||||||||||||||||| ||||  ||| |||||||||| ||||||| |||||||||||||| || | | || |||||| ||    
T  3862016 atacatcctttt-aataatgaaattgctaagtagaagttaataacaatcctcgtggatacaaattatttattacttcgattgactctagtacacttgcca 3861918  T
Q  149 aatatctatcat 160  Q
    ||||||||||||    
T  3861917 aatatctatcat 3861906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 17857996 - 17857879
Alignment:
Q  44 aatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttttattacttcgatcgaatttggttcac 142  Q
    |||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || || ||| ||| || |||||| |  |||||| |||    
T  17857996 aatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaactttattactatttcgatagcttttggtacac 17857897  T
Q  143 ttgtcaaatatctatcat 160  Q
    ||| ||||||||||||||    
T  17857896 ttgccaaatatctatcat 17857879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 9967 - 10109
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatt-ttt 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | |||||| |||| |||    
T  9967 actcaactgcctaggggaccaatataaatttatacatcctttttaataatgaaattgctaagtagaagttaaatacagtccctgaggaaacgaattcttt 10066  T
Q  117 tattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||||||||||||| |||||||| ||||| |||||||    
T  10067 tattacttcgatcgaatttgattcacttgccaaatttctatca 10109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 24326 - 24185
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||    
T  24326 actcaactgcctagggcaccaataataatttatacatcctttttaataatgaaattgttgagtagaagttaaatacagtcctcgtggaaacaaatttatt 24227  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    | ||||||||| |  |||||| |||||| ||||| |||||||    
T  24226 actacttcgatagcttttggtacacttgccaaatttctatca 24185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 12575440 - 12575300
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    ||||||||||||||||||||| |  || || |||||||||||||||||||||| ||| | ||||||| ||||  |||||||||||||| || |||| |||    
T  12575440 actcaactgcctagggcaccattg-aatttaatacatcctttttaataatgaacttgttgagtagaagttaacaacagtcctcgtggatacgaattattt 12575342  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||| ||||||||| |||||| ||||||| |||||    
T  12575341 attacttcgattgaatttggtacacttgccaaatatttatca 12575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 14418568 - 14418707
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    |||||||||||||||||| | ||  || || | | ||||||||| |||| ||||||||||||| | | ||||  || |||||||||| ||| |||| |||    
T  14418568 actcaactgcctagggcaaccattgaatttaacatatcctttttgataaagaaattgctaagttgtagttaacaacggtcctcgtgg-aacgaattattt 14418666  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    | ||||||||| |  ||||||||||||| |||| ||||||||    
T  14418667 actacttcgatag-ctttggttcacttgccaaaaatctatca 14418707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 453863 - 453951
Alignment:
Q  72 ttgctaagtagaaattaaatacagtcctcgtggaaacaaatttt-ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||||||||  || ||||||||||| || || ||| ||| |||||| || |  |||||| ||||||||||||||||||||    
T  453863 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattagtacttccatagtttttggtacacttgtcaaatatctatca 453951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 9467309 - 9467429
Alignment:
Q  41 ataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaattttttattacttcgatcgaatttggt 138  Q
    ||||||||| |||||||||| |  ||| ||| |||||||| |||||||||  || ||||||||||| || || ||| ||| ||||||||| |  ||||||    
T  9467309 ataaatttactacatcctttattttaacgaacttgctaagaagaaattaacaacggtcctcgtggatacgaactttattactacttcgatagcttttggt 9467408  T
Q  139 tcacttgtcaaatatctatca 159  Q
     |||||| |||||||||||||    
T  9467409 acacttgccaaatatctatca 9467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 15928544 - 15928472
Alignment:
Q  72 ttgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttg 145  Q
    |||| ||||||| |||||| |||||||  |||||||||||| |||||||||||||||  || || |||||||||    
T  15928544 ttgccaagtagagattaaa-acagtccctgtggaaacaaatattttattacttcgatttaaattagttcacttg 15928472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 13496092 - 13496232
Alignment:
Q  20 tcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattt-ttt 117  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || ||||| |||    
T  13496092 tcaactgcctaggacaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaatttattt 13496191  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||| |  ||||||||||||||||||| |||||||    
T  13496192 attacttcgatag-ttttggttcacttgtcaaatctctatca 13496232  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 10765022 - 10765165
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaatttt 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || || |||     
T  10765022 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaacttta 10765121  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| |||||||||||||    
T  10765122 ttactacttcgatagcttttggtacacttgccaaatatctatca 10765165  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 13493365 - 13493508
Alignment:
Q  18 actcaactgcctagggcac-caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaatttt 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||  ||||||||||||  || ||||||||||| || || |||     
T  13493365 actcaactgcctagggcaatcaatataaatttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtcctcgtggatacgaacttta 13493464  T
Q  116 ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||| ||||||||| |  |||||| |||||| |||||||||||||    
T  13493465 ttactacttcgatagcttttggtacacttgccaaatatctatca 13493508  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 1936764 - 1936873
Alignment:
Q  49 atacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtca 148  Q
    ||||||| || ||| |||||||||||| |||||||| ||||  |  ||| | |||||||  |||| || ||||||||||| |||||||||||||||| ||    
T  1936764 atacatcgttattactaatgaaattgccaagtagaagttaacaatggtcattgtggaaatgaattattcattacttcgattgaatttggttcacttgcca 1936863  T
Q  149 aatatctatc 158  Q
    ||||||||||    
T  1936864 aatatctatc 1936873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 49716595 - 49716735
Alignment:
Q  21 caactgcctagggca-ccaatataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaac-aaatttttt 117  Q
    ||||||||||||||| || ||| ||||||| |||||||||| |  ||| ||| ||||||||||||||||||  || ||||||||||| || || ||| ||    
T  49716595 caactgcctagggcaacccata-aaatttactacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacgaactttatt 49716693  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||| |  |||||| |||||||||| |||||||||    
T  49716694 attacttcgatagtttttggtacacttgtcaattatctatca 49716735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 32505983 - 32505857
Alignment:
Q  37 caatataaatttatacatcctttttaataatgaaattgctaagtagaaattaa-ataca---gtcctcgtggaaac-aaattttttattacttcgatcga 131  Q
    ||||||||||||||||||||||||| |||| |||||||   ||||||| |||| || ||   ||||||||||| || |  || |||||||||||||| |     
T  32505983 caatataaatttatacatcctttttgataaagaaattgtcgagtagaagttaacatgcaatggtcctcgtggatacgatcttatttattacttcgatag- 32505885  T
Q  132 atttggttcacttgtcaaatatctatca 159  Q
     ||||||||||||| |||||||||||||    
T  32505884 ttttggttcacttgccaaatatctatca 32505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 49720129 - 49720214
Alignment:
Q  72 ttgctaagtagaaattaaatacagtcctcgtggaaac-aaattttttattacttcgatcgaatttggttcacttgtcaaatatcta 156  Q
    ||||||||||||||||||  || ||||||||||| || || ||| ||||||||||||| |  |||||| |||||||||| ||||||    
T  49720129 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattattacttcgatagtttttggtacacttgtcaattatcta 49720214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 34552525 - 34552438
Alignment:
Q  72 ttgctaagtagaaattaaatacagtcctcgtggaaacaaatttt-ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    ||||||||||||||||||  || ||||||||||| || || ||| ||| ||||||||| |  |||||| ||||||||||||||||||||    
T  34552525 ttgctaagtagaaattaacaacggtcctcgtggatacgaactttattactacttcgatagt-tttggtacacttgtcaaatatctatca 34552438  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 50196804 - 50196715
Alignment:
Q  71 attgctaagtagaaattaaatacagtcctcgtggaaacaaatttt-ttattacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    |||||||||| || |||||  || ||||||||||| ||||||||| |||||||||| || |  |||||| |||||| ||||||| |||||    
T  50196804 attgctaagttgagattaacaacggtcctcgtggatacaaattttattattacttcaatagtttttggtacacttgccaaatatttatca 50196715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 37183699 - 37183627
Alignment:
Q  92 acagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgtc-aaatatctatcattac 163  Q
    |||||||||||||||| ||  |||||| ||||||||| | || |||| |||||| | ||||||||||||||||    
T  37183699 acagtcctcgtggaaataatatttttactacttcgatagtatatggtacacttgccaaaatatctatcattac 37183627  T

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Target: scaffold0068 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 33849 - 33730
Alignment:
Q  41 ataaattta-tacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaa-ttttttattacttcgatcgaatttggt 138  Q
    ||||||||| |||||||||| |  ||| ||| ||||||||||||||||||  || ||||||||||| ||||| ||| ||| ||||||||| |  ||||||    
T  33849 ataaatttagtacatcctttattttaacgaacttgctaagtagaaattaacaacggtcctcgtggatacaaactttattactacttcgatag-ttttggt 33751  T
Q  139 tcacttgtcaaatatctatca 159  Q
     |||||| |||||||||||||    
T  33750 acacttgccaaatatctatca 33730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 150 - 11
Alignment:
Q  18 actcaactgcctagggcaccaatataaatttatacatcctttttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacaaatttttt 117  Q
    |||||||||||||||||| | ||  || || | | ||||||||| |||| ||||||||||||| | | ||||  || |||||||||| ||| |||| |||    
T  150 actcaactgcctagggcaaccattgaatttaacatatcctttttgataaagaaattgctaagttgtagttaacaacggtcctcgtgg-aacgaattattt 52  T
Q  118 attacttcgatcgaatttggttcacttgtcaaatatctatca 159  Q
    | ||||||||| |  ||||||||||||| |||| ||||||||    
T  51 actacttcgatag-ctttggttcacttgccaaaaatctatca 11  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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