View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_2 (Length: 540)
Name: NF16481_low_2
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Complemental strand, 9371085 - 9370574
Alignment:
| Q |
11 |
cagagataccaaaactcaaagaataattctacaatttggtccccacaccgaccaatataaccaatgcaaatcagacggatgtttgtaacaaattttcttg |
110 |
Q |
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| T |
9371085 |
cagagataccaaaactcaaagaataattctacaatttggtccccacaccgaccaatataaccaatgcaaatcagacggatgtttgtaacaaattttattg |
9370986 |
T |
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| Q |
111 |
gattcttttgaagtttataataatacttataggaataataatagaaacattagagaaagggcacactaacatagaaataccatgtgagatacataagttt |
210 |
Q |
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| T |
9370985 |
gattcttttgaagtttataataatacttataggaataataatagaaacattagagaaagggcacactaacatagaaataccatgtgagatacataagttt |
9370886 |
T |
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| Q |
211 |
aattggttggcatgtcaattaaataatacatttgcatctctatgatagattctgtgatgtgacatattttgttgtgaataatattttaaagggtttgagg |
310 |
Q |
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| T |
9370885 |
aattggttggcatgtcaattaaataatacatttgcatctctatgatagattctgtgatgtgacatattttgttgtgaataatattttaatgggtttgagg |
9370786 |
T |
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| Q |
311 |
attattgattttgttgactagggaacaggttaggcatccattttgagaaatgagaattccaatatgggttatgttggttttttcaaattgtgctcatgat |
410 |
Q |
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| T |
9370785 |
attattaattttgttgactagggaacaggttaggcatccattttgagaaatgagaattccaatatgggttatgttggttttttcatattgtgctcatgat |
9370686 |
T |
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| Q |
411 |
taatttcaagggtataaaatttagattggtatagttttactctaaaatccagctgggattttactttttgtttccatgtgcactgtatgtgaagcttata |
510 |
Q |
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| T |
9370685 |
taatttcaagggtataaaatttagattggtatagttttactctaaaatccagctgggattttactttttgtttccatgtgcactgtacgtgaaacttata |
9370586 |
T |
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| Q |
511 |
gatgttgggtat |
522 |
Q |
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| T |
9370585 |
gatgttgggtat |
9370574 |
T |
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Back To:
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 33820277 - 33820319
Alignment:
| Q |
56 |
caccgaccaatataaccaatgcaaatcagacggatgtttgtaa |
98 |
Q |
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| T |
33820277 |
caccgaccaatataaccaacgcaaatcagacggatgtttgtaa |
33820319 |
T |
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