View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_20 (Length: 270)
Name: NF16481_low_20
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 1044746 - 1044501
Alignment:
| Q |
9 |
agcagagaagctagtatgagaagaatgaataaaaaatataactatgtctataattaacaaaattcttaattaagtgaccaaattcactgcaaaaccaatg |
108 |
Q |
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| T |
1044746 |
agcagagaagctagtatgagaagaatgaataaaaaatataactatgtctataattaacaaaattcttaattaagtgaccaaattcactgcaaaaccaatg |
1044647 |
T |
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| Q |
109 |
tataagaagaaaaacaacttattaatatggaggtccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaacca |
208 |
Q |
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| T |
1044646 |
tataagaagaaaaacaacttattaatatggaggtccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaacca |
1044547 |
T |
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| Q |
209 |
acaaccggatcagaaatgtagaatgtctccctattatacttgttga |
254 |
Q |
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| T |
1044546 |
acaaccggatcagaaatgtagaatgtctccctattatacttgttga |
1044501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 1034226 - 1034122
Alignment:
| Q |
142 |
tccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctcccta |
241 |
Q |
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| T |
1034226 |
tccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctg |
1034127 |
T |
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| Q |
242 |
ttata |
246 |
Q |
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||||| |
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| T |
1034126 |
ttata |
1034122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 1066197 - 1066118
Alignment:
| Q |
173 |
tttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgtt |
252 |
Q |
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| T |
1066197 |
tttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgtt |
1066118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 1059116 - 1059026
Alignment:
| Q |
162 |
tacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgtt |
252 |
Q |
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| T |
1059116 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtt |
1059026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 1053833 - 1053761
Alignment:
| Q |
180 |
attcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgtt |
252 |
Q |
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| T |
1053833 |
attcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgtt |
1053761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 1071921 - 1071845
Alignment:
| Q |
176 |
cttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgtt |
252 |
Q |
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| T |
1071921 |
cttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtt |
1071845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 1047164 - 1047089
Alignment:
| Q |
177 |
ttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgtt |
252 |
Q |
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| T |
1047164 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtt |
1047089 |
T |
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