View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16481_low_3 (Length: 505)
Name: NF16481_low_3
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 205 - 484
Target Start/End: Complemental strand, 30503403 - 30503123
Alignment:
| Q |
205 |
tgtcttactcttgtttataagatatggttatgcaatcttgccctttatttttaaaaaa-tataaatgcttatgcttgcttgtagcacacgtagctcttat |
303 |
Q |
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| T |
30503403 |
tgtcttactcttgtttataagatatggttatgcaatcttgcccttgatttttaaaaaaatataaatgcttatgcttgcttgtagcacacgtagctcttat |
30503304 |
T |
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| Q |
304 |
aacaaaacagtttttcctctattctcttctttccactcgctcactgtcgctctcactgtcactgtgttccaatctcttactcgcaaactttcttcttcaa |
403 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503303 |
aataaaacagtttttcctctattctcttcattccactcgctcactctcgctctcactgtcactgtgttccaatctcttactcgcaaactttcttcttcaa |
30503204 |
T |
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| Q |
404 |
aatttcaannnnnnnnnnnnaaaattctgtttcgatcttcatggcgggtgataacactcctaactccatgaaagaatcctc |
484 |
Q |
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|||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503203 |
aatttcaactctctctctctaaaactctgtttcgatcgtcatggcgggtgataacactcctaactccatgaaagaatcctc |
30503123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 205 - 484
Target Start/End: Complemental strand, 30543746 - 30543466
Alignment:
| Q |
205 |
tgtcttactcttgtttataagatatggttatgcaatcttgccctttatttttaaaaaa-tataaatgcttatgcttgcttgtagcacacgtagctcttat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30543746 |
tgtcttactcttgtttataagatatggttatgcaatcttgcccttgatttttaaaaaaatataaatgcttatgcttgcttgtagcacacgtagctcttat |
30543647 |
T |
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| Q |
304 |
aacaaaacagtttttcctctattctcttctttccactcgctcactgtcgctctcactgtcactgtgttccaatctcttactcgcaaactttcttcttcaa |
403 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30543646 |
aataaaacagtttttcctctattctcttcattccactcgctcactctcgctctcactgtcactgtgttccaatctcttactcgcaaactttcttcttcaa |
30543547 |
T |
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| Q |
404 |
aatttcaannnnnnnnnnnnaaaattctgtttcgatcttcatggcgggtgataacactcctaactccatgaaagaatcctc |
484 |
Q |
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|||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30543546 |
aatttcaactctctctctctaaaactctgtttcgatcgtcatggcgggtgataacactcctaactccatgaaagaatcctc |
30543466 |
T |
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