View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16481_low_4 (Length: 486)
Name: NF16481_low_4
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 12 - 479
Target Start/End: Complemental strand, 17594847 - 17594381
Alignment:
| Q |
12 |
ttaagtataatgtggctgttgattgttttcaaatgtcaataatttactatacccgtgtgccgacaaaagaaaaa---taaatgacaaacttgttatattg |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17594847 |
ttaagtataatgtggttgttgattgttttcaaatgtcaacaatttactatacccgtgtgccgacaaaagaaaaaagataaatgacaaacttgttatattg |
17594748 |
T |
|
| Q |
109 |
caaaatatttataaaatatgagggggagacatgtgatgtgatatagttagtggtggagggtgaaattgagtggaatctcatcattcagctttgtatcctt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17594747 |
caaaatatttataaaatatgagggggagacatgtgatgtgatatagt----ggtggagggtgaaattgagtggaatctcatcattcagctttgtatcctt |
17594652 |
T |
|
| Q |
209 |
tgcacacaaaaatggaacaaaacattattcaaagatgggaagccaaagtttcaaccaaactcaaaaacaccacaaaacaacaagcatggccacttatcaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17594651 |
tgcacacaaaaatggaacaaaacattattcaaagatgggaagccaaagtttcaaccaaactgaaaaacaccacaaaacaacaagcatggccactcatcaa |
17594552 |
T |
|
| Q |
309 |
agactttttcaatctccacaaacgcttccctaacctcgccacatgttacggtatccacggatccaacggtgaggtgggatgcatacgttactgtgctgga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17594551 |
agactttttcaatctccacaaacgcttccctaacctcgccacatgttacggtatccacggatccaacggtgaggtgggatgcatacgttactgtgctgga |
17594452 |
T |
|
| Q |
409 |
tcctccctcccatcagacggatcacaagaagtgagctggtcaaaggagagattggtagccgttgatgatgt |
479 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17594451 |
ttctccctcccatcagacggatcacaagaagtgagctggtcaaaggagagattggtagccgttgatgatgt |
17594381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University