View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16481_low_7 (Length: 441)
Name: NF16481_low_7
Description: NF16481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16481_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 47661172 - 47661368
Alignment:
| Q |
1 |
agtgtcaatttcgaaacgttgaggttaagctttttgattatttaaatttaaatttctaatgtttcttcatctcttctttatgcagggttacactcattat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47661172 |
agtgtcaatttctaaacgttgaggttaagctttttgattatttaaatttaaatttctaatgtttcttcatctcttctttatgcagggttgcactcattat |
47661271 |
T |
|
| Q |
101 |
gatttttgccatcgtcttttacattatactcgcatttatgtgtcatggtccttttctgacttcgtgttggagataagctctcaaggctaactgtaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47661272 |
gatttttgccatcgtcttttacattatactcgcatttatgtgtcatggtccttttctgacttcgtgttggagataagctctcaaggctaactgtaaa |
47661368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 226 - 439
Target Start/End: Original strand, 47661397 - 47661608
Alignment:
| Q |
226 |
gaccaataatgtatactgggtcaaagaaaaaagaaatattcatacttgtatttattgggatgcaatgttaccgttttaggatagtgcacgttttagaaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47661397 |
gaccaataatgtatactgggtcaaagaaaaaagaaatattcatacttgtatttattgggatgcaatgttaccgttttaggctagtgcacgttttagaaaa |
47661496 |
T |
|
| Q |
326 |
atgttacgcaatgtggatgagtttgcattgcaagataccctattgtatgggtatatttacaattctaaaggaacactgtaattttttccctattgttccc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
47661497 |
ttgttacgcaatgtggatgagtttgcattgcaagataccctattgtatgggtatatttacaattctgaaggaacac--taattttttccctattgttccc |
47661594 |
T |
|
| Q |
426 |
ttcatctcactcga |
439 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
47661595 |
ttcatttcactcga |
47661608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University