View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16482_high_3 (Length: 482)
Name: NF16482_high_3
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16482_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 25379475 - 25379139
Alignment:
| Q |
20 |
agtaaatagttagatgttgatgagattcgaacttgatcactttatgactccgaacttactttatatgttgcagaaagatagttggagtgaagaagaagaa |
119 |
Q |
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| T |
25379475 |
agtaaatagttagttgttgatgagattcgaactttatcactttgtgactccaaacttactttatatgttgcagaaagatagttggagtgaagaagaagaa |
25379376 |
T |
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| Q |
120 |
aggatgcttgttgaaactcatggcatgattggaaatcgttgggcggagatagcaaagagaattcctggaagaactgagaatgcaataaagaatcattgga |
219 |
Q |
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| T |
25379375 |
aggatgcttattgaaactcatggcatgattggaaatcgttgggcagagatagcaaagagaattcctggaagaactgagaatgcaataaagaatcattgga |
25379276 |
T |
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| Q |
220 |
atgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaaaccactgatggtaaaccacaatcttctattcttcaagactatatcaaaac |
319 |
Q |
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| T |
25379275 |
atgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaaaccactgatggtaaaccacaatcttctattcttcaagactatatcaaaac |
25379176 |
T |
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| Q |
320 |
tttgactactcaaaaagcgttcatcagtactactgct |
356 |
Q |
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| T |
25379175 |
tttgactactcaaaaagcgttcatcagtactactgct |
25379139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 347 - 474
Target Start/End: Complemental strand, 25379115 - 25378988
Alignment:
| Q |
347 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
446 |
Q |
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| T |
25379115 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatca |
25379016 |
T |
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| Q |
447 |
ccacttatatctgaatcttatgatgatg |
474 |
Q |
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| T |
25379015 |
ccacttatatctgaatcttatgatgatg |
25378988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 29671358 - 29671189
Alignment:
| Q |
90 |
cagaaagatagttggagtgaagaagaagaaaggatgcttgttgaaactcatggcatgattggaaatcgttgggcggagatagcaaagagaattcctggaa |
189 |
Q |
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| T |
29671358 |
cagaaagatagttggagtgaagaagaagagaaaatattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattccaggaa |
29671259 |
T |
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| Q |
190 |
gaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaa |
259 |
Q |
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| T |
29671258 |
gaactgaaaatgccataaaaaatcattggaatgccacaaaaagaagacaaaattcaagaagaaagaacaa |
29671189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 43866494 - 43866564
Alignment:
| Q |
159 |
tgggcggagatagcaaagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaa |
229 |
Q |
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| T |
43866494 |
tgggcggagattgcgaaaagattgccaggaagaactgagaatgcaataaaaaaccattggaatgcaacaaa |
43866564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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