View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16482_high_8 (Length: 266)
Name: NF16482_high_8
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16482_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5663434 - 5663682
Alignment:
| Q |
1 |
atgagacaaagaagtgaacataaagacatgggataaacaataatgaaatgttgattttgttgataaataagtaatgtaagttttatggatgaaggaagtg |
100 |
Q |
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| T |
5663434 |
atgagacgaagaagtgaacataaagacatgggataaacaataatgaaatgttgattttgttgataaataagtaatgtaagttttatggatgaaggaagta |
5663533 |
T |
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| Q |
101 |
ttgaaggtatcattctt-gaagatagaatgtatagaatgatggatgtttttatacttttgttaaatggagagaaaatgatattcgaacctccttttattg |
199 |
Q |
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| T |
5663534 |
ttgaaggtatcattctttgaagatagaatgtatagaatgatggatgtttttatacttttgttaaatggagagaaaatgatattcgaacctccttttattg |
5663633 |
T |
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| Q |
200 |
ccaacaattctactactccttcaacattggataactccatatgcattgt |
248 |
Q |
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| T |
5663634 |
ccaacaattctactactccttcaacattggataactccatgtgcattgt |
5663682 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 31974465 - 31974513
Alignment:
| Q |
184 |
gaacctccttttattgccaacaattctactactccttcaacattggata |
232 |
Q |
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| T |
31974465 |
gaacctccttttattgcaaataattcaactattccttcaacattggata |
31974513 |
T |
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