View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16482_high_9 (Length: 257)
Name: NF16482_high_9
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16482_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 7202343 - 7202573
Alignment:
| Q |
20 |
aaaaggacagtcgttaagtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaaccatt |
119 |
Q |
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| T |
7202343 |
aaaaggacagtcattaagtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaaccatt |
7202442 |
T |
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| Q |
120 |
atatagccaacacaacatgctcttcaatgccaatgtagcatcccaacaacccatttgttaggttcttgtcttctccatcaaagtttgttactttctgtca |
219 |
Q |
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| T |
7202443 |
atatagccaacacaacatgctcttcaatgccaatgtagcatcccaacaacccatttattaggttcttgtcttctccatcaaagtttgttactttctgtca |
7202542 |
T |
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| Q |
220 |
ccctttttcttattctttcatatcttctctg |
250 |
Q |
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| T |
7202543 |
ccctttttcttattctttcatatcttgtctg |
7202573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 7195141 - 7195339
Alignment:
| Q |
36 |
agtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaaccattatatagccaacacaac |
135 |
Q |
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| T |
7195141 |
agtcagagacatttgtggcctttcaatttccaatttgtgtcattatttacaacatactctctcagccacagttatccaaccattattgagcaaacacaac |
7195240 |
T |
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| Q |
136 |
atgctcttcaatgccaatgtagcatcccaacaacccatttgttaggttcttgtcttctccatcaaagtttgttactttctgtcaccctttttcttattct |
235 |
Q |
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| T |
7195241 |
atacttttc---------gaagctgccacacaactcattt-ttaggttcttgtcttctccatcaaagtttg-tactttctgtcaccctttttcttattct |
7195329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 7208776 - 7208970
Alignment:
| Q |
36 |
agtcagagacatttgtggcctttcaatttccaatttgtgtcattattgacagcatactctctcagccacagttatccaaccattatatagccaacacaac |
135 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
7208776 |
agtcagagacatttatggcctttcaatttccaatttgtgtcattatttacaacatactctctcagccacagttatccaaccattattgagcaaacacaac |
7208875 |
T |
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| Q |
136 |
atgctcttcaatgccaatgtagcatcccaacaacccatttgttaggttcttgtcttctccatcaaagtttgttactttctgtcaccctttttcttattct |
235 |
Q |
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| T |
7208876 |
atacttttc---------gaagctgccacacaactcattt-ttaggttcttgtcttctccatcaaagtttgttattttctgtcaccctttttcttattct |
7208965 |
T |
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