View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16482_low_11 (Length: 249)
Name: NF16482_low_11
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16482_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 33543632 - 33543817
Alignment:
| Q |
1 |
ttatgaaattgaaactgaataaaactgcaagctttgtggattaaggtctaacaaagttagtttttccattccgtaaaacttttacaaatttaagatgtct |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33543632 |
ttatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaagttagtttttccattccgtaaaacttaaacaaatttaagatgtct |
33543731 |
T |
|
| Q |
101 |
ttgacaggggaatgaggagatataaccaaaagggtctttgacatagattgatatg-----accaagctcattacaatgtcgtcttt |
181 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33543732 |
ttgacaggggaataaggagatataaccaaaagggtctttgacatagattgatatgatataaccaagctcattacaatgtcgtcttt |
33543817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 33361390 - 33361261
Alignment:
| Q |
1 |
ttatgaaattgaaactgaataaaactgcaagctttgtggattaaggtctaacaaagttagtttttccattccgtaaaacttttacaaatttaagatgtct |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33361390 |
ttatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaagttagtttttccattccgtaaaactttaacaaatttaagatgtct |
33361291 |
T |
|
| Q |
101 |
ttgacaggggaatgaggagatataaccaaa |
130 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |
|
|
| T |
33361290 |
ttgacaggggaataaggagatatagccaaa |
33361261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 33355783 - 33355734
Alignment:
| Q |
190 |
aatgttgtctttgtcgtactctacatccgccaccgctccacacctttcat |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33355783 |
aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttcat |
33355734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 33355836 - 33355772
Alignment:
| Q |
122 |
ataaccaaaagggtctttgacatagattgatatg-----accaagctcattacaatgtcgtcttt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33355836 |
ataaccaaaagggtctttgacatagattgatatgatataaccaagctcattacaatgtcgtcttt |
33355772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 33543812 - 33543855
Alignment:
| Q |
196 |
gtctttgtcgtactctacatccgccaccgctccacacctttcat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543812 |
gtctttgtcgtactctacatccgccaccgctccacacctttcat |
33543855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University