View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16482_low_12 (Length: 241)
Name: NF16482_low_12
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16482_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 395470 - 395268
Alignment:
| Q |
20 |
ttaattggagaagccaatgatcgactatgttgtgttggacgtggtagatacaacaacaaaattaggccatttacaaaactttcccaggggagaaaaaggg |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
395470 |
ttaattggagaagccaatgatctactatgttgtgttggacgtggtagatacaacaacaaaattaggccatttacaaaactttcccaggggagaaaaaggg |
395371 |
T |
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| Q |
120 |
tctaaatggtttccaattggaagcatgtacacggtgaccacatttattgatctttcccatgcagaattatatggaagcatgtttgtcatattcatgagtt |
219 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
395370 |
tctaaatggtttccaattggaagcatgtagacggtggccacatttattgatctttcccatgcagaattatatggaagcatgtttgtcat-ttcatgagtt |
395272 |
T |
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| Q |
220 |
attt |
223 |
Q |
| |
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|||| |
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| T |
395271 |
attt |
395268 |
T |
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