View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16482_low_13 (Length: 239)

Name: NF16482_low_13
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16482_low_13
NF16482_low_13
[»] chr5 (2 HSPs)
chr5 (1-223)||(33543305-33543527)
chr5 (9-223)||(33361506-33361718)
[»] chr2 (3 HSPs)
chr2 (50-151)||(45345632-45345733)
chr2 (31-131)||(45341300-45341400)
chr2 (177-223)||(45345554-45345600)
[»] chr8 (1 HSPs)
chr8 (31-130)||(28302671-28302770)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33543527 - 33543305
Alignment:
Q  1 tcattattttatattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttattaactcaacccaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543527 tcattattttatattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttattaactcaacccaaat 33543428  T
Q  101 aaatagcaacattaaaataaatcccaacaattcctcccctaaactgattcatgcatgcattcaatttaatttggcagcacctcacaaactccaagttgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  33543427 aaatagcaacattaaaataaatcccaacaattcctcccctaaactgattcatgcatgcattcaatttaatttggcagcacctcagaaactctaagttgat 33543328  T
Q  201 ctcttgatttatggaatacatca 223  Q
    |||||||||||||||||||||||    
T  33543327 ctcttgatttatggaatacatca 33543305  T

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Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 33361506 - 33361718
Alignment:
Q  9 ttatattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttattaactcaacccaaataaatagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361506 ttatattgcttaatctcaatcatacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttattaactcaacccaaataaatagca 33361605  T
Q  109 acattaaaataaatcccaacaattcctcccctaaactgattcatgcatgcattcaatttaatttggcagcacctcacaaactccaagttgatctcttgat 208  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||||||||    
T  33361606 acattaaaataaattccaacaattcctcccctaaactgattcatgcatgcattcaatttaaatttg--gcacctcacaaactccaagttgatctcttgat 33361703  T
Q  209 ttatggaatacatca 223  Q
    ||||| |||||||||    
T  33361704 ttatgaaatacatca 33361718  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 45345733 - 45345632
Alignment:
Q  50 attctacttagtggaacctagaaactaggaacttattaactcaacccaaataaatagcaacattaaaataaatcccaacaattcctcccctaaactgatt 149  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  45345733 attctacttggtggaacctagaaactaggaacttattaactgaacccaaataaatagtaacattaaaataaatcctaacaattcctcccctaaattgatt 45345634  T
Q  150 ca 151  Q
    ||    
T  45345633 ca 45345632  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 45341400 - 45341300
Alignment:
Q  31 tacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttattaactcaacccaaataaatagcaacattaaaataaatcccaacaa 130  Q
    ||||||||||||||||   ||||||||| |||||||||| | | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  45341400 tacaaagaaaacaaatgcaattctacttggtggaacctacagattaggaacttattaactgaacccaaataaatagtaacattaaaataaatcccaacaa 45341301  T
Q  131 t 131  Q
    |    
T  45341300 t 45341300  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 45345600 - 45345554
Alignment:
Q  177 gcacctcacaaactccaagttgatctcttgatttatggaatacatca 223  Q
    ||||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  45345600 gcacctcacaaactccaagctgatctcttaatttttggaacacatca 45345554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 28302671 - 28302770
Alignment:
Q  31 tacaaagaaaacaaattttattctacttagtggaacctagaaactaggaacttattaactcaacccaaataaatagcaacattaaaataaatcccaacaa 130  Q
    ||||||||||||||||   ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  28302671 tacaaagaaaacaaatgcaattctacttggtggaacctagaaactaagaacttattaactgaacccaaataaatagtaacattaaaataaatccgaacaa 28302770  T

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