View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16482_low_14 (Length: 230)
Name: NF16482_low_14
Description: NF16482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16482_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 40975815 - 40975617
Alignment:
| Q |
15 |
acttcattggctagtgaaagtgatgtatgcaatcctgatgtaaccatacgtgaaccaccatcattatctaatgatgcagttctgaacaaagaagaagtta |
114 |
Q |
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| T |
40975815 |
acttcattggctagtgaaagtgatgtatgcaatcctgatgtaaccatacgtgaaccaccatcattatctaatgatgcagttctgaacaaagaagaagtta |
40975716 |
T |
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| Q |
115 |
actctccgtgttctgtacagtgccaatgtaagaatgatgataacaaattaatggaaatccaaagaagacatctgtcagatagaagtgataatgaaccta |
213 |
Q |
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| T |
40975715 |
actctccgtgttctgtacagtgccaatgtaagaatgatgataacgaattaatggaaatccaaagaagacatctgtcagatagaagtgataatgaaccta |
40975617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 40967273 - 40967177
Alignment:
| Q |
15 |
acttcattggctagtgaaagtgatgtatgcaatcctgatgtaaccatacgtgaaccaccatcattatctaatgatgcagttctgaacaaagaagaag |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
40967273 |
acttaattggctagtgaaagtgatgtatgcaatcctgatgtaaccatacgcgaaccaccatcattatctaatgatgcagttctgaatacagaagaag |
40967177 |
T |
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