View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16483_high_1 (Length: 568)

Name: NF16483_high_1
Description: NF16483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16483_high_1
NF16483_high_1
[»] chr3 (4 HSPs)
chr3 (1-550)||(3133289-3133829)
chr3 (79-154)||(3122276-3122351)
chr3 (191-259)||(21754245-21754313)
chr3 (185-233)||(25252041-25252089)
[»] chr8 (2 HSPs)
chr8 (182-283)||(12138169-12138270)
chr8 (185-247)||(1310131-1310193)
[»] chr7 (1 HSPs)
chr7 (185-284)||(5336505-5336604)
[»] chr5 (2 HSPs)
chr5 (186-229)||(40919293-40919336)
chr5 (185-222)||(18839169-18839206)
[»] chr6 (1 HSPs)
chr6 (182-230)||(770340-770388)


Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 3133289 - 3133829
Alignment:
Q  1 gaaggtttggaatccataaactttctcctatagttttaagctatcaaaagttactaggctgtaaaatgagatcaatcgaagaagtataactccagcttga 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133289 gaaggtttggaatccataaactttctcctaaagttttaagctatcaaaagttactaggctgtaaaatgagatcaatcgaagaagtataactccagcttga 3133388  T
Q  101 catcgtagttctaaattgtgagatttaatgcttaacaacgggctagggtacaaatagtggtgctatagcgttgtggcctatgggatttgaacaaatagct 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3133389 catcgtagttctaaattgtgagatttaatgcttaacagcgggctagggtacaaatagtggtgctatagcgttgtggcctgtgggatttgaacaaatagct 3133488  T
Q  201 attgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcactgtagcatggtagaatttgaacaaacagtggcttttcgcgat 300  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  3133489 attgttacgtgatacactatttagtacaaaatgatgtgaaacagcgggactatagcactgtagcatggtagaatttg----aacagtggcttttcgcgat 3133584  T
Q  301 ctgcgatggacaaaacttacagaaccttcacataaagatttaggttcccaaaagataccaaaattggaccagtataactcattttagacttaagggctgt 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3133585 ctgcgatggacaaaatttacagaaccttcacataaagatttaggttcccaaaagataccaaaattggaccagtataactcattttagacttaagggttgt 3133684  T
Q  401 tgcagacatcataatcctgaagagtttcaacctaaaattttgcattcaactttcttatattaaataagggaccctaacttcataatgagatttctagata 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  3133685 tgcagacatcataatcctgaagagtttcaacctaaaattttgcattcaactttcttatattaaataaggg-----aacttcataatgagatttctagata 3133779  T
Q  501 agaagcttcaatgtttgagagttataccgcgtagctggaaatcaaggctt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133780 agaagcttcaatgtttgagagttataccgcgtagctggaaatcaaggctt 3133829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 3122351 - 3122276
Alignment:
Q  79 aagaagtataactccagcttgacatcgtagttctaaattgtgagatttaatgcttaacaacgggctagggtacaaa 154  Q
    |||||| |||||||||||| |||||| |||| |  || |||||| ||||||||||||||| ||||||  |||||||    
T  3122351 aagaagcataactccagctggacatcatagtgcataagtgtgagttttaatgcttaacaaggggctaatgtacaaa 3122276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 21754245 - 21754313
Alignment:
Q  191 acaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcact 259  Q
    |||||| ||||||||| || |||||||||||| ||||||| || ||| ||| |||||  ||||||||||    
T  21754245 acaaatcgctattgttccgcgatacactatttagtacaaattgttgtcaaatagcggcgctatagcact 21754313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 25252041 - 25252089
Alignment:
Q  185 atttgaacaaatagctattgttacgtgatacactatttcgtacaaaatg 233  Q
    |||||||||||| ||| ||||| |||||||| |||||| ||||||||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatg 25252089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 12138169 - 12138270
Alignment:
Q  182 gggatttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcactgtagcatggtagaatttgaaca 281  Q
    ||||| ||||||||| ||||||||  | | ||||| ||||| |||||||||||||| ||| ||||| |||||||||| || |||| || |||||||||||    
T  12138169 gggatctgaacaaattgctattgtcccataatacaatatttagtacaaaatggtgtaaaaaagcggcactatagcacagttgcattgtggaatttgaaca 12138268  T
Q  282 aa 283  Q
    ||    
T  12138269 aa 12138270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 1310131 - 1310193
Alignment:
Q  185 atttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgg 247  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||| ||  ||||||| |||||    
T  1310131 atttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcgg 1310193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 5336505 - 5336604
Alignment:
Q  185 atttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcactgtagcatggtagaatttgaacaaac 284  Q
    ||||||||||||  |||||||| | ||||||||| ||| | ||||| || ||| ||| ||||   |||||||||| ||| || |||||||||||||||||    
T  5336505 atttgaacaaattcctattgttccatgatacactgtttagcacaaagtgttgttaaatagcgttgctatagcactatagtatagtagaatttgaacaaac 5336604  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 40919293 - 40919336
Alignment:
Q  186 tttgaacaaatagctattgttacgtgatacactatttcgtacaa 229  Q
    |||||||||||  |||||||| ||||||||||||||||||||||    
T  40919293 tttgaacaaatcactattgttccgtgatacactatttcgtacaa 40919336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 18839206 - 18839169
Alignment:
Q  185 atttgaacaaatagctattgttacgtgatacactattt 222  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  18839206 atttgaacaaatagctattgttccgtgatacagtattt 18839169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 770340 - 770388
Alignment:
Q  182 gggatttgaacaaatagctattgttacgtgatacactatttcgtacaaa 230  Q
    ||||||||||||||| | ||||||| |||||||| |||||| |||||||    
T  770340 gggatttgaacaaatcggtattgttccgtgatacgctatttagtacaaa 770388  T

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