View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16483_high_4 (Length: 394)
Name: NF16483_high_4
Description: NF16483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16483_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 57 - 386
Target Start/End: Original strand, 1414086 - 1414433
Alignment:
| Q |
57 |
aagttcttgctttagactcaggatatatgtttgtattattattacaatgagaaattatggtgtttgaaaagaagggaaagtcttatttatacaacaaaaa |
156 |
Q |
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| T |
1414086 |
aagttcttgctttagactcaggatatatgtttgtattattattacaatgagaaattatggtgtttgagaagaagggaaagtcttatttatacaacaaaaa |
1414185 |
T |
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| Q |
157 |
ataacaaacttttaaacaaacaa-gcaattacttgtaacataagtaaagtctttaaaagtccattaatcaaggtaattatctaactaactaatgg----- |
250 |
Q |
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| T |
1414186 |
ataacaaactttttaacaaacaaggcaattacttgtaacataagtaaagtctctaaaactccattaatcaaggtaactatctaactaactaatggattac |
1414285 |
T |
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| Q |
251 |
------------taaccatctttttataacgtttgttgttgccacaaaagtattaattttgtgattcacaagtcaccannnnnnnnaacacataaataac |
338 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
1414286 |
actttcaaatactaactatctttttataacgtttgttgttgccacgaaagtattaattttgtgattcacaagccaccattttttttaacacataaataac |
1414385 |
T |
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| Q |
339 |
actcttaattatggttggtattgctttaacaaacgtgtgtcctttgct |
386 |
Q |
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| T |
1414386 |
actcttaattatggttggtattgctttaacaaacgtgtgtcctttgct |
1414433 |
T |
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