View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16483_low_3 (Length: 416)
Name: NF16483_low_3
Description: NF16483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16483_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 47258914 - 47259309
Alignment:
| Q |
1 |
aagagatggaaaataaaatactcaagaccctagattttgatctgagcaaccctactgttatgacttttctaaggcaagaaagtgccaaatctgtctgttt |
100 |
Q |
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| T |
47258914 |
aagagatggaaaataaaatactcaagaccctagattttgatctgagcaaccctactgttatgacttttctaaggcaagaaagtgccaaatctgt----tt |
47259009 |
T |
|
| Q |
101 |
gttagttattctgtttttggaaatgtcatttatgtgaagaatattgagagtacaacagactaattatgtctagttactgatgcaggaagtttaacgaaat |
200 |
Q |
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| T |
47259010 |
gttagttattctgtttttggaaatgtcatttatgggaagaatatttt-agtacaacagactaattatgtctagttactgatgcaggaagtttaacgaaat |
47259108 |
T |
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| Q |
201 |
cgcctgtgcgaaaaacgatgtgagcttgattttttcattatttatctgtttgacatttcaaaagcgttgttaagtgttctaattgttgtttatttggttt |
300 |
Q |
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| T |
47259109 |
cgcctgtgcgaaaaacgatgtgagcttgattttttcattatttatctgtttgacatttcaaaagcgttgttaagtgttctaattgttgtttatttggttt |
47259208 |
T |
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| Q |
301 |
gtgtttcttcaggattcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattggattatgattgtttgagcttcttgccttctt |
400 |
Q |
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| T |
47259209 |
gtgtttcttcaggattcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattggattatgattgtttgagcttcttgccttctt |
47259308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 401
Target Start/End: Original strand, 47266497 - 47266905
Alignment:
| Q |
2 |
agagatggaaaataaaatactcaagaccctagattttgatctgagcaaccctactgttatgacttttctaaggcaagaaagtgccaaatctgtctgtttg |
101 |
Q |
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| T |
47266497 |
agagatggaaactgacatacttaagaccctagataatgatctgggcagtcccactgttaagacttttttaaggcaagagattgccaaatctgt----tta |
47266592 |
T |
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| Q |
102 |
ttagttattctgtttttggaaatgtcatttatgtgaagaatattgagagtacaacagactaattatgtctagttactg--atgcaggaagtttaacgaaa |
199 |
Q |
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| T |
47266593 |
ttaattattttgtttttgaaaatgtcaattatgttaagaaaatcgaaaagacaatagactaattat-tgtagtttctgtgatacaggaggtttaatgaaa |
47266691 |
T |
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| Q |
200 |
tcgcctgtgcgaaaaacgatgtgagcttgattttttcattatttatct--gttt--gacatttcaaaagcgttgttaagtgttctaattgttgtttattt |
295 |
Q |
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| T |
47266692 |
ttgtctgtaagaagaaaaacgtgagtttagttttttagttgtttatctatgttttggacattttgaaagcgttgttaggtgttttgattgttgtttgttt |
47266791 |
T |
|
| Q |
296 |
ggtttg-------tgtttctt-caggattcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattggattatgattgtttgagc |
387 |
Q |
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| T |
47266792 |
gttttactttccttctttctttcaggcttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgagg |
47266891 |
T |
|
| Q |
388 |
ttcttgccttcttt |
401 |
Q |
| |
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|||||||||||||| |
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| T |
47266892 |
ttcttgccttcttt |
47266905 |
T |
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