View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16484_high_1 (Length: 652)
Name: NF16484_high_1
Description: NF16484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16484_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 11732417 - 11733049
Alignment:
| Q |
1 |
gcagtggcagcggtggcactgatgtagacaacaacgacgagaagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggta |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732417 |
gcagtggcagcggtggcgctgatgtagacaacaacgacgagaagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggta |
11732516 |
T |
|
| Q |
101 |
caatggccgcaccttctctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaattgat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11732517 |
caatggccgcaccttatctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgat |
11732616 |
T |
|
| Q |
201 |
caccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcagaaaagagcagtgaacctaaagtagattcctcttcctcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732617 |
caccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcagaaaagagcagtgaacctaaagtagattcctcttcctcta |
11732716 |
T |
|
| Q |
301 |
aacaagaattctttccagccttgaaggagcttacactttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattggnnnnnnncagacc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11732717 |
aacaagaattctttccagccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagacc |
11732816 |
T |
|
| Q |
401 |
atctttcccttgcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgccactgtgtactaatcttgatgaagagttggttctggtagat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11732817 |
atctttcccttgcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgccactgtgtactaatctcgatgaagagttggttctggtagat |
11732916 |
T |
|
| Q |
501 |
tccaatgtaagatcaatgagggaaaccaaaactgaaaccgaaactactgcagaagcttcactaagtcctctcttgaatttgaagttcatggtaatcgagc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732917 |
tccaatgtaagatcaatgagggaaaccaaaactgaaaccgaaactaccgtagaagcttcactaagtcctctcttgaatttgaagttcatggtaatcgagc |
11733016 |
T |
|
| Q |
601 |
gtattgaagaatctccaccacagaattggcttg |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11733017 |
gtattgaagaatctccaccacagaattggcttg |
11733049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 11828660 - 11828853
Alignment:
| Q |
48 |
cttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaatgccttg |
147 |
Q |
| |
|
||||| |||||||| |||| ||| ||| || |||| ||||| |||| |||||||| || | ||| || ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
11828660 |
cttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgccttg |
11828759 |
T |
|
| Q |
148 |
ttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaattgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
241 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||||| || ||||| ||| | |||||| ||||||||| |||||| |||||||| ||||| |
|
|
| T |
11828760 |
ttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattgga |
11828853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 85 - 265
Target Start/End: Original strand, 12039597 - 12039777
Alignment:
| Q |
85 |
tattcattgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatt |
184 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||| | ||| ||| ||| ||||| || ||||||||||||||||||| |||||| || |||||| |||| |
|
|
| T |
12039597 |
tattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatt |
12039696 |
T |
|
| Q |
185 |
tctaccgccaattgatcaccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcagaaaa |
265 |
Q |
| |
|
||| |||||||| ||| | |||||| ||||||||| |||||| ||||| |||||||| || || ||||||||||| |||| |
|
|
| T |
12039697 |
tctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaaaa |
12039777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 265
Target Start/End: Complemental strand, 11901747 - 11901524
Alignment:
| Q |
42 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaat |
141 |
Q |
| |
|
||||| ||||| ||||| | |||| ||| ||||||| || ||||||||||| ||||||||| | | |||||| ||||| |||||| |||| | || | |
|
|
| T |
11901747 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcacaccttgtctaactggctccattccatccagt |
11901648 |
T |
|
| Q |
142 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaattgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
241 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||| | ||||| || ||||| ||||| |||||| ||||||||| |||||| ||||||| |||| |
|
|
| T |
11901647 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaaattcggagactgga |
11901548 |
T |
|
| Q |
242 |
atctcttgaattcattgcagaaaa |
265 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
11901547 |
ctctctgaaattcattgcagaaaa |
11901524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 91 - 262
Target Start/End: Original strand, 11860835 - 11861006
Alignment:
| Q |
91 |
ttgtagggtacaatggccgcaccttctctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctacc |
190 |
Q |
| |
|
|||| |||||| |||||| || || ||||| ||||||| ||| ||||||| ||||| ||| |||||||||| |||||||| || ||||||||||| || |
|
|
| T |
11860835 |
ttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggtaaatttaccttgaacgactgtcccaattgcaaatttctccc |
11860934 |
T |
|
| Q |
191 |
gccaattgatcaccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgcaga |
262 |
Q |
| |
|
||||| ||||| |||||| ||||||||| |||||| |||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
11860935 |
accaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaaattcattgcaga |
11861006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 312 - 523
Target Start/End: Complemental strand, 11901477 - 11901269
Alignment:
| Q |
312 |
tttccagccttgaaggagcttacactttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattggnnnnnnncagaccatctttccctt |
411 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||| || ||||||||||||||||||| || | || ||||||| |||| || |
|
|
| T |
11901477 |
tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatga---gatttggggtaatgatagaccatatttcagtt |
11901381 |
T |
|
| Q |
412 |
gcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgccactgtgtactaatcttgatgaagagttggttctggtagattccaatgtaag |
511 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| ||| |||| || | | || ||||||||| ||| | ||||| || || || || ||||| |
|
|
| T |
11901380 |
gcatttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatgagcttgttcttgtggagtcgaacgtaag |
11901281 |
T |
|
| Q |
512 |
atcaatgaggga |
523 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11901280 |
atcaatgaggga |
11901269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 523
Target Start/End: Original strand, 12039905 - 12040032
Alignment:
| Q |
396 |
agaccatctttcccttgcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgccactgtgtactaatcttgatgaagagttggttctgg |
495 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||| || ||| || || ||||| ||| ||||||| | | ||||||||||||| ||| | ||||||| |
|
|
| T |
12039905 |
agaccatctttcagttgcatttccaaactaaatgtccaatattgccccaagttagcttgcatgccactatatcctaatcttgatgatgagctcgttctgg |
12040004 |
T |
|
| Q |
496 |
tagattccaatgtaagatcaatgaggga |
523 |
Q |
| |
|
| || || || ||||| ||||||||||| |
|
|
| T |
12040005 |
tggagtcaaacgtaaggtcaatgaggga |
12040032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 11861030 - 11861096
Alignment:
| Q |
307 |
aattctttccagccttgaaggagcttacactttcggattgtcctaaactcgaaagttggtgggaaaa |
373 |
Q |
| |
|
||||||||||| |||||||||| ||| || | || ||||||||||| || |||||||||||||||| |
|
|
| T |
11861030 |
aattctttccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaa |
11861096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 11828899 - 11828967
Alignment:
| Q |
308 |
attctttccagccttgaaggagcttacactttcggattgtcctaaactcgaaagttggtgggaaaatga |
376 |
Q |
| |
|
|||||||||| |||||||||| || ||| | || ||||||| |||||| || |||||||||||||||| |
|
|
| T |
11828899 |
attctttccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatga |
11828967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University