View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16484_high_3 (Length: 428)
Name: NF16484_high_3
Description: NF16484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16484_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 89 - 406
Target Start/End: Complemental strand, 4751080 - 4750764
Alignment:
| Q |
89 |
ccctatgacttggccttannnnnnnnaatcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat |
188 |
Q |
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| T |
4751080 |
ccctatgacttggccttattttttttaatcaagaagaaaggacaaaataaagtaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat |
4750981 |
T |
|
| Q |
189 |
agagacagaacaatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttgcaattggcaggtaggtaattggacaatctgg |
288 |
Q |
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| T |
4750980 |
agagagagaacaatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttgcaattggcaggtaggtaattggacaatctgg |
4750881 |
T |
|
| Q |
289 |
attaattctctccatcctgcacaccaaaaaacaatcagagacagaacaaaattggttatttatttagaaaaatgaattataattttattcctttgcaaaa |
388 |
Q |
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| T |
4750880 |
attaattctctccatcctgcacacca-aaaacaatcagagacagaacaaaattggttatttatttagaaaaatgaattataattttattcctttgcaaaa |
4750782 |
T |
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| Q |
389 |
tggaagcaagtgtgtatt |
406 |
Q |
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| T |
4750781 |
tggaagcaagtgtgtatt |
4750764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 89 - 406
Target Start/End: Complemental strand, 4741816 - 4741499
Alignment:
| Q |
89 |
ccctatgacttggccttannnnnnnnaatcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat |
188 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4741816 |
ccctatgacttggccttattttttttaatcaagaagaaaggacaaaataaagcaaaaactacgattttaggcgaagaactccaagagcattgacaagaat |
4741717 |
T |
|
| Q |
189 |
agagacagaacaatcccatgatttatgttacttttataattcttgcaagac-aattatctgtaggccttgcaattggcaggtaggtaattggacaatctg |
287 |
Q |
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| T |
4741716 |
agagacagaacaatcccatgatttatgttacttttataattcttgcaagacaaattatctgtaggccttgcaattggcaggtaggtaattggacaatctg |
4741617 |
T |
|
| Q |
288 |
gattaattctctccatcctgcacaccaaaaaacaatcagagacagaacaaaattggttatttatttagaaaaatgaattataattttattcctttgcaaa |
387 |
Q |
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| T |
4741616 |
gattaattctctccatcctgcacacc-aaaaacaatcagagacagaacaaaattggttatttatttagaaaaatgaattataattttattcctttgcaaa |
4741518 |
T |
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| Q |
388 |
atggaagcaagtgtgtatt |
406 |
Q |
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| T |
4741517 |
atggaagcaagtgtgtatt |
4741499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 4759337 - 4759228
Alignment:
| Q |
200 |
aatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttgcaattggcaggtaggtaattggacaatctggattaattctct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
4759337 |
aatcccatgatttatgttacttttataattcttgcaaggcaattatctttaggccttggcactggcaggtaggtaactggacaatctggattaattctct |
4759238 |
T |
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| Q |
300 |
ccatcctgca |
309 |
Q |
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|||||||||| |
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| T |
4759237 |
ccatcctgca |
4759228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4741855 - 4741817
Alignment:
| Q |
16 |
agagtgtcaacttttgtgttaaaaaattgtgttccaaaa |
54 |
Q |
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| T |
4741855 |
agagtgtcaacttttgtgttaaaaaattgtgttccaaaa |
4741817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4751119 - 4751081
Alignment:
| Q |
16 |
agagtgtcaacttttgtgttaaaaaattgtgttccaaaa |
54 |
Q |
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| T |
4751119 |
agagtgtcaacttttgtgttaaaaaattgtgttccaaaa |
4751081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 13583687 - 13583616
Alignment:
| Q |
116 |
atcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaa |
187 |
Q |
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||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| ||| || ||||| |
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| T |
13583687 |
atcaagaagaaaggacaaaacaaagtaaaaactacaatattaggcgatcaactccaagaacatcgaaaagaa |
13583616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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