View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16484_high_6 (Length: 221)

Name: NF16484_high_6
Description: NF16484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16484_high_6
NF16484_high_6
[»] chr6 (9 HSPs)
chr6 (77-196)||(33269535-33269654)
chr6 (77-190)||(33414562-33414675)
chr6 (103-195)||(33384049-33384141)
chr6 (106-203)||(31565020-31565117)
chr6 (103-190)||(33258215-33258302)
chr6 (105-189)||(33395074-33395160)
chr6 (133-195)||(33278972-33279034)
chr6 (122-196)||(33406911-33406985)
chr6 (102-140)||(33293040-33293078)
[»] scaffold0428 (2 HSPs)
scaffold0428 (103-190)||(2336-2423)
scaffold0428 (133-195)||(15219-15281)
[»] chr2 (2 HSPs)
chr2 (81-197)||(17447867-17447983)
chr2 (154-190)||(17445570-17445606)
[»] chr1 (1 HSPs)
chr1 (39-76)||(26512662-26512699)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 33269535 - 33269654
Alignment:
Q  77 caaattgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcac 176  Q
    |||| ||||| ||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  33269535 caaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcac 33269634  T
Q  177 ttcaattagaacactgatgc 196  Q
    |||||||||||||| |||||    
T  33269635 ttcaattagaacaccgatgc 33269654  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 33414562 - 33414675
Alignment:
Q  77 caaattgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcac 176  Q
    |||| ||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  33414562 caaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcac 33414661  T
Q  177 ttcaattagaacac 190  Q
    ||||||||||||||    
T  33414662 ttcaattagaacac 33414675  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 33384049 - 33384141
Alignment:
Q  103 acttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatg 195  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||    
T  33384049 acttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatg 33384141  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 31565117 - 31565020
Alignment:
Q  106 tgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgcgcgaatc 203  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||| |||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatc 31565020  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 33258215 - 33258302
Alignment:
Q  103 acttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacac 190  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||    
T  33258215 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacac 33258302  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 33395074 - 33395160
Alignment:
Q  105 ttgcattgctagatcatcaaccaactccttgaatttctcacttctt--ccgacaaagtcggtttcacagttcacttcaattagaaca 189  Q
    ||||||||  |||||| ||||||||||||||||| | ||||||||   || ||||||||||||||||||||||||||||| ||||||    
T  33395074 ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaaca 33395160  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 33278972 - 33279034
Alignment:
Q  133 ttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatg 195  Q
    |||||||||| |||||| ||  ||||||||||||||||||| |||||||||||||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatg 33279034  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 33406911 - 33406985
Alignment:
Q  122 caaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatgc 196  Q
    |||||||||||| ||||| ||||||||| || ||||||||||||||| |||||||| |||||| |||||| ||||    
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgc 33406985  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 33293040 - 33293078
Alignment:
Q  102 aacttgcattgctagatcatcaaccaactccttgaattt 140  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  33293040 aacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

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Target: scaffold0428 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 2336 - 2423
Alignment:
Q  103 acttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacac 190  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||    
T  2336 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacac 2423  T

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Target: scaffold0428; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 15281 - 15219
Alignment:
Q  133 ttgaatttctcacttcttccgacaaagtcggtttcacagttcacttcaattagaacactgatg 195  Q
    |||||||||| |||||| ||  ||||||||||||||||||| |||||||||||||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatg 15219  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 17447983 - 17447867
Alignment:
Q  81 ttgaacatgtggacaagcaaaaacttgcattgctagatcatcaaccaactccttgaatttctcacttcttccgacaaagtcggtttcacagttcacttca 180  Q
    |||||| |||||| |||||   ||||||||||| |||||||||||||||||||||||| |||| ||||| || ||||||||||||||| |||||| ||||    
T  17447983 ttgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattca 17447884  T
Q  181 attagaacactgatgcg 197  Q
    |||||| ||| ||||||    
T  17447883 attagaccaccgatgcg 17447867  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 17445606 - 17445570
Alignment:
Q  154 acaaagtcggtttcacagttcacttcaattagaacac 190  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  17445606 acaaagttggtttcacagttcccttcaattagaacac 17445570  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 26512699 - 26512662
Alignment:
Q  39 cgaatcatgcacttcaaggaagacatatgttgtgtttt 76  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  26512699 cgaatgatgcgcttcaaggaagacatatgttgtgtttt 26512662  T

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