View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16485_low_1 (Length: 325)
Name: NF16485_low_1
Description: NF16485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16485_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 47440382 - 47440079
Alignment:
| Q |
6 |
agcagcacagatatcattgatactagggttctttgaaggacaagaagacgatgactcaagaacaatgttttctttgagataaacattgtaacactttgaa |
105 |
Q |
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| T |
47440382 |
agcatcacaaatatcattgatactagggttctttgaaggacaagaagacgatgactcaagaacaatgttttctttgagataaacattgtaacactttgaa |
47440283 |
T |
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| Q |
106 |
caaaggttcttgtttgaaggatgaccatagtaaccacaaccattggcacaaagtgatggaaccatgttgtttcacttagttttgactgaagaaaaagatt |
205 |
Q |
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| T |
47440282 |
caaaggttcttgtttgaaggaagaccatagtaaccacaaccattggcacaaagtgatggaaccatgttgtttcacttagttttgactgaagaaaaagatt |
47440183 |
T |
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| Q |
206 |
aaaatagttgtaattatatcggttagcaaacttggagaaagggagaggcttgtggagaaaagatgcaaagcttgaaattgttggattattgaataggttg |
305 |
Q |
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| T |
47440182 |
aaaatagttgtaattatatcggttaacaaacttggagaaagggagaggcttgtggagaaaagatgcaaagcttgaaattgttggatgattgaataggttg |
47440083 |
T |
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| Q |
306 |
tgtg |
309 |
Q |
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|||| |
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| T |
47440082 |
tgtg |
47440079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 45701870 - 45701738
Alignment:
| Q |
70 |
atgttttctttgagataaacattgtaacactttgaacaaaggttcttgtttgaaggatgaccatagtaaccacaaccattggcacaaagtgatggaacca |
169 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||| | || ||||||||| ||| |||| |||||||| |
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| T |
45701870 |
atgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccataaaagccgcaaccattgagacagagtgttggaacca |
45701771 |
T |
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| Q |
170 |
tgttgtttcactt-agttttgactgaagaaaaa |
201 |
Q |
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| T |
45701770 |
tgttgtttcacttaatttttgactaaagaaaaa |
45701738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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