View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16485_low_2 (Length: 306)
Name: NF16485_low_2
Description: NF16485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16485_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 24555528 - 24555736
Alignment:
| Q |
48 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctatatgtggcgagat |
147 |
Q |
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| T |
24555528 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctata--tggcgagtt |
24555625 |
T |
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| Q |
148 |
aattcctcgcgaatcctcacgaatgaccatacagcttgtgctgtatgatttga-tcacaacatgtttaatctatcaaagacatagattaagtattaatca |
246 |
Q |
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| T |
24555626 |
aattcctcgtgaatccacacgaatgaccatacagtttgtgctatatgatcggattgacaacatgtttaatctatcaaagacatacattaagtataaatca |
24555725 |
T |
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| Q |
247 |
tatgcttgatc |
257 |
Q |
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| T |
24555726 |
tatgcttgatc |
24555736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 24555485 - 24555513
Alignment:
| Q |
31 |
gttgatcttgcatatttaattaagacttt |
59 |
Q |
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| T |
24555485 |
gttgatcttgcatatttaattaagacttt |
24555513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 7998982 - 7998929
Alignment:
| Q |
132 |
ctatatgtggcgagataattcctcgcgaatcctcacgaatgaccatacagcttg |
185 |
Q |
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| T |
7998982 |
ctatatgtcgcgagaatattcctcgtgaatcctcacgaatgacaatacggcttg |
7998929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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