View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_high_1 (Length: 712)
Name: NF16486_high_1
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 19 - 697
Target Start/End: Complemental strand, 6916522 - 6915848
Alignment:
| Q |
19 |
tcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| |
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| T |
6916522 |
tcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaa |
6916423 |
T |
|
| Q |
119 |
cattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagccccctgaaattctgttggtactttcagttcaacaagcataacaggttctaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6916422 |
cattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttca----gcataacaggttctaa |
6916327 |
T |
|
| Q |
219 |
tataactggtctggaagctgtgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatct |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916326 |
tataactggtctggaagctgtgtaacactctctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatct |
6916227 |
T |
|
| Q |
319 |
gtcaagacaactcggagattttcaactggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatg |
418 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916226 |
gtcaagacaactcggagattttgaactggatgtccaatcaaggcaccagagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatg |
6916127 |
T |
|
| Q |
419 |
gaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916126 |
gaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttg |
6916027 |
T |
|
| Q |
519 |
tcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaacccca |
618 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916026 |
ccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaacccca |
6915927 |
T |
|
| Q |
619 |
tactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
697 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915926 |
tactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
6915848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 493 - 615
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
493 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
592 |
Q |
| |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
|
| Q |
593 |
gctttccaactgtagcatcaacc |
615 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
| Q |
367 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
466 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
15038314 |
gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg |
15038413 |
T |
|
| Q |
467 |
acccagcaggaagtggttcaatata |
491 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
15038414 |
acccagcagggagtggttcaatata |
15038438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 249 - 361
Target Start/End: Original strand, 15038055 - 15038167
Alignment:
| Q |
249 |
tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaactgga |
348 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacggga |
15038154 |
T |
|
| Q |
349 |
tgtccaatcaagg |
361 |
Q |
| |
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|||||||| |||| |
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| T |
15038155 |
tgtccaattaagg |
15038167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
| Q |
144 |
cttgttgaggtcaccagcaacagccccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| |||||| |
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| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa |
15037924 |
T |
|
| Q |
244 |
cact |
247 |
Q |
| |
|
|||| |
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|
| T |
15037925 |
cact |
15037928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
29 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
83 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
82 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
144 |
Q |
| |
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||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
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|
| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
629 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
683 |
Q |
| |
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|||||| || |||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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