View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16486_high_21 (Length: 337)
Name: NF16486_high_21
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 43082519 - 43082760
Alignment:
| Q |
20 |
ctccaacatcaacatcaacataagttagttactggtgaatacttgtcaatttgagctaggacaatgtgactttgatcatctctagcacagacacaatgta |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43082519 |
ctccaacatcaacatcaacatcagttagttactggtgaatacttgtcaatttgagctaggacaatgcgactttgatcatctctagcacagacacaatgta |
43082618 |
T |
|
| Q |
120 |
gtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtcaatccgttaacaaatggc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43082619 |
gtaggtcttagccatgaaacactaactcagttccggtcatggttgttgtgactaattttatgagcatcttgtgcattctgtcaatccgttaacaaaaggc |
43082718 |
T |
|
| Q |
220 |
tatacctcgatctgtcgcaaacagacaggcagcaactctaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082719 |
tatacctcgatctgtcgcaaacagacaggcagcaactctaat |
43082760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 43082759 - 43082802
Alignment:
| Q |
282 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082759 |
atgttcttggccatcgaatgtgatgagttcaaaacctgtgtaat |
43082802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University