View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16486_high_24 (Length: 306)

Name: NF16486_high_24
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16486_high_24
NF16486_high_24
[»] chr6 (8 HSPs)
chr6 (18-297)||(6679424-6679703)
chr6 (18-297)||(6774583-6774862)
chr6 (43-185)||(6668545-6668684)
chr6 (43-185)||(6779831-6779970)
chr6 (254-297)||(6668428-6668471)
chr6 (254-297)||(6780044-6780087)
chr6 (30-64)||(6765855-6765889)
chr6 (94-135)||(9866416-9866457)
[»] chr5 (7 HSPs)
chr5 (18-218)||(36848014-36848213)
chr5 (18-203)||(6162397-6162579)
chr5 (237-297)||(36848275-36848335)
chr5 (141-218)||(36859535-36859614)
chr5 (237-292)||(6162666-6162721)
chr5 (248-295)||(36859694-36859741)
chr5 (254-297)||(6163424-6163467)
[»] chr3 (4 HSPs)
chr3 (18-204)||(46521961-46522144)
chr3 (30-182)||(49881548-49881697)
chr3 (237-297)||(46521808-46521868)
chr3 (239-297)||(49881411-49881469)
[»] chr1 (2 HSPs)
chr1 (18-204)||(18135526-18135709)
chr1 (250-294)||(18135386-18135430)
[»] scaffold0299 (1 HSPs)
scaffold0299 (78-125)||(13409-13453)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 6679703 - 6679424
Alignment:
Q  18 tgtccttcgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctgg 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6679703 tgtcctttgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaacgctgattgggattgccgccgcattcagagccaaattcctgg 6679604  T
Q  118 acatacattccaaaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaatcctgagacatatta 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679603 acatacattccaaaaatgcatacatctactccttcaatctattgaaacagaagtataacctgaaaccaagggaacttctattaaatcctgagacatatta 6679504  T
Q  218 gttcagaagaaagaattggtgataaaccactgaacatactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679503 gttcagaagaaaaaattggtgataaaccactgaacatactcttgatctataagagaattcagtagggtaattctcctctg 6679424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 6774583 - 6774862
Alignment:
Q  18 tgtccttcgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctgg 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6774583 tgtcctttgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaacgctgattgggattgccgccgcattcagagccaaattcctgg 6774682  T
Q  118 acatacattccaaaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaatcctgagacatatta 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6774683 acatacattccaaaaatgcatacatctactccttcaatcttttgaaacagaagtataacctgaaaccaagggaacttctattaaatcctgagacatatta 6774782  T
Q  218 gttcagaagaaagaattggtgataaaccactgaacatactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6774783 gttcagaagaaagaattggtgataaaccactgaacatactcttgatctataagagaattcagtagggtaattttcctctg 6774862  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 6668684 - 6668545
Alignment:
Q  43 ttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctggacatacattccaaaaatgcatacat 142  Q
    ||||| ||||| |||||||| || ||||| ||  | |||||||||||||| |   |||| |||||| | ||||||||||||||| |||| ||||||||||    
T  6668684 ttgacagaatcgagatatgaaatatatacgcagcgttgattgggattgccac---attccgagccatactcctggacatacattgcaaatatgcatacat 6668588  T
Q  143 ctactccttcaatctcttgaaacagaagtataacctgaaacca 185  Q
    || ||||||||||||  ||||| ||||| ||||||| ||||||    
T  6668587 ctgctccttcaatcttctgaaatagaagaataacctaaaacca 6668545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 6779831 - 6779970
Alignment:
Q  43 ttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctggacatacattccaaaaatgcatacat 142  Q
    ||||| ||||| |||||||| || ||||||||  | ||||||| |||||| |   |||| || ||| | ||||||||||||||| |||| ||||||||||    
T  6779831 ttgacagaatcgagatatgaaatatatacacatcgttgattggtattgccac---attccgatccatactcctggacatacattgcaaatatgcatacat 6779927  T
Q  143 ctactccttcaatctcttgaaacagaagtataacctgaaacca 185  Q
    |  ||||||||||||  ||||| ||||| ||||||| ||||||    
T  6779928 ccgctccttcaatcttctgaaatagaagaataacctaaaacca 6779970  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 6668471 - 6668428
Alignment:
Q  254 tactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  6668471 tactcttgatctataagagaattcagcagggtaattctcctctg 6668428  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 6780044 - 6780087
Alignment:
Q  254 tactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  6780044 tactcttgatctataagagaattcagcagggtaattctcctctg 6780087  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 6765855 - 6765889
Alignment:
Q  30 aggcctaaaatacttgacggaatcaagatatgata 64  Q
    |||||||||||||||||||||||||||||||||||    
T  6765855 aggcctaaaatacttgacggaatcaagatatgata 6765889  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 9866457 - 9866416
Alignment:
Q  94 ccgcattcagagccaaattcctggacatacattccaaaaatg 135  Q
    |||||||| |||||||| ||||| ||||||||||||||||||    
T  9866457 ccgcattcggagccaaactcctgaacatacattccaaaaatg 9866416  T

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Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 36848014 - 36848213
Alignment:
Q  18 tgtccttcgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctgg 117  Q
    |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  36848014 tgtccttctttcaggcctaaaatacttgacggaatcaagatatgaaatgtatacacaatgctgattgggattgctgc---attcagagccaaattcctgg 36848110  T
Q  118 acatacattccaaaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaatc--ctgagacatat 215  Q
    ||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  36848111 acatacattccaaaaatgcatacatctgctccttcaattttctgaaacagaagtataacctgaaaccaagggaacttttattaaatcctctgagacatat 36848210  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 6162397 - 6162579
Alignment:
Q  18 tgtccttcgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctgg 117  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||| ||| |||| | |||||||||||||||   |||||||||||||||||||||    
T  6162397 tgtccttctttcaggcctaaaatacttgacagaatcaagatatgatatgcatagacaacgttgattgggattgccg---cattcagagccaaattcctgg 6162493  T
Q  118 acatacattccaaaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaat 203  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||| || |||||||||||||||    
T  6162494 acatacattccaaaaatgcatacatctgctccttcaatctgctgaaacagaagaataacctgaaaccgagagaacttctattaaat 6162579  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 36848275 - 36848335
Alignment:
Q  237 tgataaaccactgaacatactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||    
T  36848275 tgataaaccattggacttactcttgatctataagagaattcagtagggtaattctcctctg 36848335  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 36859535 - 36859614
Alignment:
Q  141 atctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaatcct--gagacatattag 218  Q
    ||||||||||||||  |  ||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  36859535 atctactccttcaaatttctgaaacagaagtataacatgaaaccaagggaacttctattaaatcctccgagacatattag 36859614  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 6162666 - 6162721
Alignment:
Q  237 tgataaaccactgaacatactcttgatctataagagaattcagtagggtaattctc 292  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6162666 tgataaaccactgaacttactcttgatctataagagaattcagcagggtaattctc 6162721  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 36859694 - 36859741
Alignment:
Q  248 tgaacatactcttgatctataagagaattcagtagggtaattctcctc 295  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  36859694 tgaacttactcttgatctataagataattcagtagggtaattctcctc 36859741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 6163424 - 6163467
Alignment:
Q  254 tactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  6163424 tactcttgatctataagagaattcagcagggtaattctcatctg 6163467  T

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Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 46522144 - 46521961
Alignment:
Q  18 tgtccttcgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctgg 117  Q
    |||||||| || |||| ||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||||   ||||||||||||| ||||||    
T  46522144 tgtccttctttcaggcataaaatacttgacagaatcaagatatgaaatgtatacacaacgctgattcggatttccgc---attcagagccaaactcctgg 46522048  T
Q  118 acatacattccaaaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaatc 204  Q
    |||||||||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||  |||||||||||||||    
T  46522047 acatacattccaaaaatgcatatatctgctccttcaatctgctgaaacagaagaataacctgaaaccaagcaaacttctattaaatc 46521961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 49881697 - 49881548
Alignment:
Q  30 aggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctggacatacattcca 129  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||||   |||| ||||| || |||||| | |||||||||    
T  49881697 aggcctaaaatacttgacagaatcaagatatgaaatgtgtacacaacgctgatttggattgccgc---attcggagccgaactcctgggcgtacattcca 49881601  T
Q  130 aaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaa 182  Q
    |||||||||| |||||||||||||||||  ||||||||||| |||||||||||    
T  49881600 aaaatgcatatatctactccttcaatctgctgaaacagaagaataacctgaaa 49881548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 46521868 - 46521808
Alignment:
Q  237 tgataaaccactgaacatactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  46521868 tgataatccactgaacttactcttgatctataagagaattcagcagggtaattctcctctg 46521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 49881469 - 49881411
Alignment:
Q  239 ataaaccactgaacatactcttgatctataagagaattcagtagggtaattctcctctg 297  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||    
T  49881469 ataaaccactgaacttactcttgatctataagagaattcggcagggtaattttcctctg 49881411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 18135709 - 18135526
Alignment:
Q  18 tgtccttcgtttaggcctaaaatacttgacggaatcaagatatgatatgtatacacaatgctgattgggattgccgccgcattcagagccaaattcctgg 117  Q
    |||||||| || ||| ||||||||||||| ||||||||||||||| ||||| |||||| |||||||||| |||||||   ||||||||||||||||||||    
T  18135709 tgtccttctttcaggtctaaaatacttgaaggaatcaagatatgaaatgtagacacaacgctgattggggttgccgc---attcagagccaaattcctgg 18135613  T
Q  118 acatacattccaaaaatgcatacatctactccttcaatctcttgaaacagaagtataacctgaaaccaagggaacttctattaaatc 204  Q
    || ||||||||||||||||||| |||| |||||||||| |  ||||||||||| ||||||||||||||||||||||| |||||||||    
T  18135612 acgtacattccaaaaatgcatatatctgctccttcaatatgctgaaacagaagaataacctgaaaccaagggaacttatattaaatc 18135526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 18135430 - 18135386
Alignment:
Q  250 aacatactcttgatctataagagaattcagtagggtaattctcct 294  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||    
T  18135430 aacatactcttgctctataagagaattcagcagggtaattctcct 18135386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 13453 - 13409
Alignment:
Q  78 ctgattgggattgccgccgcattcagagccaaattcctggacatacat 125  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||    
T  13453 ctgattgggattgccgc---attaagagccaaattcctggacatacat 13409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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