View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_high_29 (Length: 285)
Name: NF16486_high_29
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 260
Target Start/End: Original strand, 46751044 - 46751241
Alignment:
| Q |
63 |
ttcctgcagaggcatgaattaaacatttaaagagtaacatgaaaatttgagtccaaaataaaaagtaaccggtaatttgtccatannnnnnnnnnnnnnn |
162 |
Q |
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| T |
46751044 |
ttcctgcagaggcatgaattaaacatttaaagagtaatatgtaaatttgagtccaaaataaaaagtaactggtaatttgtccatatttttatttttattt |
46751143 |
T |
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| Q |
163 |
ncactttgtctgaaaattagaaaaggaaagaaatatactggtagattcttcctttaaccttggaagnnnnnnnggaatttggttaatgtgtgttatgg |
260 |
Q |
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| T |
46751144 |
ttacttgggctaaaaattagaaaaggaaagaaatatactggtagattcttccttaaaccttggaagaaaaaaaggaatttggttaatgtgtgttatgg |
46751241 |
T |
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