View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_high_34 (Length: 254)
Name: NF16486_high_34
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_34 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 51772600 - 51772347
Alignment:
| Q |
1 |
gtgtatattaatctgggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttct |
100 |
Q |
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| T |
51772600 |
gtgtatattaatctgggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttct |
51772501 |
T |
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| Q |
101 |
cattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaata |
200 |
Q |
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| T |
51772500 |
cattggagatgaagaggagaccggctagagggccagatgtggtggatagataacactgcgaaattttcaacaggctctcgtcctcactcacactaaaata |
51772401 |
T |
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| Q |
201 |
ccgcataaacactttctccactccacccacttgaagaatttgagcccctaagct |
254 |
Q |
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| T |
51772400 |
ccgcataaacactttctccactccacccacttgaagaatttgagcccctaagct |
51772347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 51808160 - 51807922
Alignment:
| Q |
16 |
ggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaaga |
115 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
51808160 |
ggacataccttatatcggatcctacgcatttgacctttctgattgaagacttttattgatctctcactgcagaaggcaaccttttcattggagatgaaga |
51808061 |
T |
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| Q |
116 |
ggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacacttt |
215 |
Q |
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| T |
51808060 |
gcagaccagctagaggaccagatgtggtggatagataacactgtgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacacttt |
51807961 |
T |
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| Q |
216 |
ctccactccacccacttgaagaatttgagcccctaagct |
254 |
Q |
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| T |
51807960 |
ctccactccacccatttgaagaatttgagcccctaagct |
51807922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 51804206 - 51803971
Alignment:
| Q |
17 |
gacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagag |
116 |
Q |
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| T |
51804206 |
gacttaccttatagcggatcctacgcatttgacctttctgattgaagacttttattgttctctcactgcagaaggccaccttttcattggagatgaagag |
51804107 |
T |
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| Q |
117 |
gagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttc |
216 |
Q |
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| T |
51804106 |
gagaccagatagaggaccggatgtggtggaaagataacactgcgaaacttttgatagcctctctccttctctcacactaaaatactgcctaaacattttc |
51804007 |
T |
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| Q |
217 |
tccactccacccacttgaagaatttgagcccctaag |
252 |
Q |
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| T |
51804006 |
tccactccacccatttgaagaatttgagcccctaag |
51803971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 51780438 - 51780213
Alignment:
| Q |
19 |
cttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagagga |
118 |
Q |
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| T |
51780438 |
cttaccttatagcggatcctacacatttgacctttctgattatagacttttattgatctgtcactgcaaaaggcaaccttttcattggagatgaagagga |
51780339 |
T |
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| Q |
119 |
gaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttctc |
218 |
Q |
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| T |
51780338 |
ggccagctagagggccagatgtggtggaaagataacagtgagaaactttcaaca----------ctctctcacactaaaatagtgcataaaaaatttatc |
51780249 |
T |
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| Q |
219 |
cactccacccacttgaagaatttgagcccctaagct |
254 |
Q |
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| T |
51780248 |
cactccacccacttaaagaattttagcccctaagct |
51780213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 12196136 - 12196221
Alignment:
| Q |
70 |
attgatctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataaca |
155 |
Q |
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| T |
12196136 |
attgatctctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgatagataaca |
12196221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 51761472 - 51761423
Alignment:
| Q |
130 |
ggaccagatgtggtggatagataacactgcgaaattttcaacagactctc |
179 |
Q |
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| T |
51761472 |
ggaccagatgtggtggacagataacagtgtgaaactttcaacagcctctc |
51761423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 7082 - 6855
Alignment:
| Q |
19 |
cttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagagga |
118 |
Q |
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| T |
7082 |
cttaccttatagcggatcctacacatttgacctttctgattatagacttttattgatctgtcactgcaaaaggcaaccttttcattggagatgaagagga |
6983 |
T |
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| Q |
119 |
gaccagctag--aggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttc |
216 |
Q |
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| T |
6982 |
ggccagctaggaggggccagatgtggtggaaagataacagtgagaaactttcaaca----------ctctctcacactaaaatagtgcataaaaaattta |
6893 |
T |
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| Q |
217 |
tccactccacccacttgaagaatttgagcccctaagct |
254 |
Q |
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|||||||||||||||| |||||||| |||||||||||| |
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| T |
6892 |
tccactccacccacttaaagaattttagcccctaagct |
6855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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