View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16486_high_47 (Length: 214)

Name: NF16486_high_47
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16486_high_47
NF16486_high_47
[»] chr7 (13 HSPs)
chr7 (13-126)||(34197442-34197555)
chr7 (16-129)||(48216446-48216561)
chr7 (16-129)||(13550454-13550569)
chr7 (63-129)||(5803527-5803593)
chr7 (90-129)||(14226982-14227021)
chr7 (90-129)||(15920178-15920217)
chr7 (91-129)||(16500163-16500201)
chr7 (91-129)||(16509458-16509496)
chr7 (91-129)||(18590005-18590043)
chr7 (91-129)||(18621642-18621680)
chr7 (92-129)||(16524575-16524612)
chr7 (93-129)||(6177476-6177512)
chr7 (93-129)||(16161026-16161062)
[»] chr8 (4 HSPs)
chr8 (16-129)||(28505182-28505297)
chr8 (20-129)||(29562466-29562577)
chr8 (63-129)||(15208888-15208954)
chr8 (93-129)||(4487331-4487367)
[»] chr6 (8 HSPs)
chr6 (16-129)||(12965173-12965288)
chr6 (61-129)||(21791577-21791646)
chr6 (93-129)||(7583769-7583805)
chr6 (93-129)||(27191600-27191636)
chr6 (93-129)||(27203453-27203489)
chr6 (93-129)||(27245742-27245778)
chr6 (93-129)||(27257605-27257641)
chr6 (63-129)||(34472864-34472930)
[»] chr4 (9 HSPs)
chr4 (16-129)||(16246323-16246438)
chr4 (16-129)||(1669479-1669594)
chr4 (93-129)||(35058572-35058608)
chr4 (13-129)||(14655615-14655732)
chr4 (13-129)||(14674049-14674166)
chr4 (63-129)||(15652874-15652940)
chr4 (63-129)||(17093667-17093733)
chr4 (96-129)||(9480971-9481004)
chr4 (16-53)||(14240684-14240721)
[»] scaffold0092 (1 HSPs)
scaffold0092 (27-129)||(16070-16174)
[»] chr3 (7 HSPs)
chr3 (63-129)||(15732265-15732331)
chr3 (63-129)||(15747350-15747416)
chr3 (63-129)||(15883809-15883875)
chr3 (63-129)||(15898988-15899054)
chr3 (93-129)||(3065428-3065464)
chr3 (63-129)||(4882684-4882750)
chr3 (63-129)||(19629228-19629294)
[»] chr2 (3 HSPs)
chr2 (63-129)||(20830046-20830112)
chr2 (63-129)||(20846950-20847016)
chr2 (84-129)||(17631012-17631056)
[»] chr1 (2 HSPs)
chr1 (63-129)||(21480040-21480106)
chr1 (16-53)||(9187371-9187408)
[»] scaffold0260 (1 HSPs)
scaffold0260 (90-129)||(12804-12843)
[»] scaffold0074 (1 HSPs)
scaffold0074 (13-129)||(13272-13387)
[»] chr5 (8 HSPs)
chr5 (93-129)||(16681151-16681187)
chr5 (93-129)||(23395902-23395938)
chr5 (90-129)||(30914488-30914527)
chr5 (63-129)||(24613599-24613665)
chr5 (63-129)||(24673226-24673292)
chr5 (63-129)||(24710000-24710066)
chr5 (63-129)||(24742994-24743060)
chr5 (63-129)||(24755764-24755830)
[»] scaffold0124 (1 HSPs)
scaffold0124 (96-129)||(28059-28092)
[»] scaffold0089 (1 HSPs)
scaffold0089 (93-129)||(13030-13065)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 34197442 - 34197555
Alignment:
Q  13 agatgaagtttatgtgttacctgaggttttaatcggagattcgaactcgaatcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttga 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34197442 agatgaagtttatgtgtaacctgaggttttaatcggagattcgaactggaatcttcggaaaaacttgagtcagattctgtttgttgatttcttgctttga 34197541  T
Q  113 aaccgaaaataaat 126  Q
    ||||||||||||||    
T  34197542 aaccgaaaataaat 34197555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 48216561 - 48216446
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttc-ggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaa 113  Q
    ||||| ||| |||||||||| ||||||||||||||||| |||||  |||||||| |||||| ||||| |||| | ||| |||||||||||||||||| ||    
T  48216561 tgaagcttaagtgttacctgtggttttaatcggagatttcgaaccggaatcttcaggaaaagcttgaatctggttctgcttgttgatttcttgctttaaa 48216462  T
Q  114 accgaaaataaatcgg 129  Q
    ||||||||||||||||    
T  48216461 accgaaaataaatcgg 48216446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 13550454 - 13550569
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttc-ggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaa 113  Q
    ||||| ||| |||||||||| ||||||||||||||||| | |||  |||||||| |||||| ||||| |||| | ||| ||||||||||||| |||| ||    
T  13550454 tgaagcttaagtgttacctgtggttttaatcggagatttcaaaccggaatcttcaggaaaagcttgaatctggttctgcttgttgatttcttactttaaa 13550553  T
Q  114 accgaaaataaatcgg 129  Q
    ||||||||||||||||    
T  13550554 accgaaaataaatcgg 13550569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 5803527 - 5803593
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  5803527 atcttcggaaacacttgaatctggttctgcttgttgatttcttgcttttaaaccgaaaataaatcgg 5803593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 14226982 - 14227021
Alignment:
Q  90 tgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  14226982 tgtttgttgatttctggctttgaaaccgaaaataaatcgg 14227021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 15920178 - 15920217
Alignment:
Q  90 tgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  15920178 tgtttgttgatttctggctttgaaaccgaaaataaatcgg 15920217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 16500163 - 16500201
Alignment:
Q  91 gtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  16500163 gtttgttgatttctggctttgaaaccgaaaataaatcgg 16500201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 16509458 - 16509496
Alignment:
Q  91 gtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  16509458 gtttgttgatttctggctttgaaaccgaaaataaatcgg 16509496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 18590005 - 18590043
Alignment:
Q  91 gtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18590005 gtttgttgatttctagctttgaaaccgaaaataaatcgg 18590043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 18621680 - 18621642
Alignment:
Q  91 gtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18621680 gtttgttgatttctagctttgaaaccgaaaataaatcgg 18621642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 16524575 - 16524612
Alignment:
Q  92 tttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  16524575 tttgttgatttctggctttgaaaccgaaaataaatcgg 16524612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 6177512 - 6177476
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6177512 ttgttgatttctggctttgaaaccgaaaataaatcgg 6177476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 16161062 - 16161026
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||| || ||||||||||||||||||||||||    
T  16161062 ttgttgattcctggctttgaaaccgaaaataaatcgg 16161026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 28505182 - 28505297
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttcggaaaaa-cttgagtctgatcctgtttgttgatttcttgctttgaa 113  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||  |||||||| |||||| ||||| |||||| |||||||||||||||||||||| ||    
T  28505182 tgaagtttaagtgttacctgtggttttaatcggagatttcgaaccggaatcttcagaaaaagcttgaatctgattctgtttgttgatttcttgctttaaa 28505281  T
Q  114 accgaaaataaatcgg 129  Q
    ||||||||||||||||    
T  28505282 accgaaaataaatcgg 28505297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 29562466 - 29562577
Alignment:
Q  20 gtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttcggaaaaa-cttgagtctgatcctgtttgttgatttcttgctttgaaaccg 117  Q
    ||||| ||||||| || ||||||||||||||||| |||||  |||||||| |||||| ||||| |||||| |||||||||| ||||||||||| ||||||    
T  29562466 gtttaagtgttacatgtggttttaatcggagatttcgaaccggaatcttcagaaaaagcttgaatctgattctgtttgttgctttcttgctttaaaaccg 29562565  T
Q  118 aaaataaatcgg 129  Q
    ||||||||||||    
T  29562566 aaaataaatcgg 29562577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 15208954 - 15208888
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  15208954 atcttcggaaacacttgaatctgattctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 15208888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 4487331 - 4487367
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4487331 ttgttgatttctggctttgaaaccgaaaataaatcgg 4487367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 12965173 - 12965288
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttcggaaaaa-cttgagtctgatcctgtttgttgatttcttgctttgaa 113  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||  |||||||| |||||| ||||| |||||| |||||||||||||||||||||| ||    
T  12965173 tgaagtttaagtgttacctgtggttttaatcggagatttcgaaccggaatcttcagaaaaagcttgaatctgattctgtttgttgatttcttgctttaaa 12965272  T
Q  114 accgaaaataaatcgg 129  Q
    ||||||||||||||||    
T  12965273 accgaaaataaatcgg 12965288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 21791646 - 21791577
Alignment:
Q  61 gaatcttc-ggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||| |||||| ||||| || | | ||| |||||||||||||||||| ||||||||||||||||||    
T  21791646 gaatcttcaggaaaagcttgaatccggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 21791577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 7583805 - 7583769
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7583805 ttgttgatttctggctttgaaaccgaaaataaatcgg 7583769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 27191636 - 27191600
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27191636 ttgttgatttctggctttgaaaccgaaaataaatcgg 27191600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 27203489 - 27203453
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27203489 ttgttgatttctggctttgaaaccgaaaataaatcgg 27203453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 27245742 - 27245778
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27245742 ttgttgatttctggctttgaaaccgaaaataaatcgg 27245778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 27257605 - 27257641
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27257605 ttgttgatttctggctttgaaaccgaaaataaatcgg 27257641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 34472864 - 34472930
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  34472864 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 34472930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 16246323 - 16246438
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttcggaaaaa-cttgagtctgatcctgtttgttgatttcttgctttgaa 113  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||  |||||||| |||||| ||||| |||| | |||||||||||||||||||||| ||    
T  16246323 tgaagtttaagtgttacctgtggttttaatcggagatttcgaaccggaatcttcagaaaaagcttgaatctggttctgtttgttgatttcttgctttaaa 16246422  T
Q  114 accgaaaataaatcgg 129  Q
    ||||||||||||||||    
T  16246423 accgaaaataaatcgg 16246438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 1669594 - 1669479
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt-cgaactcgaatcttc-ggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaa 113  Q
    ||||| ||| |||||||||| ||||||||||||||||| |||||  |||||||| |||||| ||||| |||| | |||||||||||||||||||||| ||    
T  1669594 tgaagcttaagtgttacctgtggttttaatcggagatttcgaaccggaatcttcaggaaaagcttgaatctggttctgtttgttgatttcttgctttaaa 1669495  T
Q  114 accgaaaataaatcgg 129  Q
    ||||||||||||||||    
T  1669494 accgaaaataaatcgg 1669479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 35058572 - 35058608
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  35058572 ttgttgatttctggctttgaaaccgaaaataaatcgg 35058608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 14655732 - 14655615
Alignment:
Q  13 agatgaagtttatgtgtt-acctgaggttttaatcggagatt-cgaactcgaatcttcggaaaaacttgagtct-gatcctgtttgttgatttcttgctt 109  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||||||| || ||| ||||| ||| | | |||||||||||||| |||  |    
T  14655732 agatgaagtttatgtgtttacctgtggtttcaatcggagatttcgaactggaatctttgggaaa-cttgaatcttggtgctgtttgttgattt-ttgtgt 14655635  T
Q  110 tgaaaccgaaaataaatcgg 129  Q
      ||||||||||||||||||    
T  14655634 gaaaaccgaaaataaatcgg 14655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 14674166 - 14674049
Alignment:
Q  13 agatgaagtttatgtgtt-acctgaggttttaatcggagatt-cgaactcgaatcttcggaaaaacttgagtct-gatcctgtttgttgatttcttgctt 109  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||||||| || ||| ||||| ||| | | |||||||||||||| |||  |    
T  14674166 agatgaagtttatgtgtttacctgtggtttcaatcggagatttcgaactggaatctttgggaaa-cttgaatcttggtgctgtttgttgattt-ttgtgt 14674069  T
Q  110 tgaaaccgaaaataaatcgg 129  Q
      ||||||||||||||||||    
T  14674068 gaaaaccgaaaataaatcgg 14674049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 15652874 - 15652940
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  15652874 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 15652940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 17093733 - 17093667
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  17093733 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 17093667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 9480971 - 9481004
Alignment:
Q  96 ttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||| ||||||||||||||||||||||||    
T  9480971 ttgatttctggctttgaaaccgaaaataaatcgg 9481004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 14240684 - 14240721
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt 53  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  14240684 tgaagtttatttgttacctgtggttttaatcggagatt 14240721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 16174 - 16070
Alignment:
Q  27 tgttacctgaggttttaatcggagatt-cgaactcgaatcttc-ggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataa 124  Q
    ||||||||| ||||||||||||||||| | |||  |||||||| |||||| ||||| |||| | ||| |||||||||||||||||| |||||||||||||    
T  16174 tgttacctgtggttttaatcggagatttcaaaccggaatcttcaggaaaagcttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataa 16075  T
Q  125 atcgg 129  Q
    |||||    
T  16074 atcgg 16070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 15732265 - 15732331
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  15732265 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 15732331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 15747350 - 15747416
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  15747350 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 15747416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 15883809 - 15883875
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  15883809 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 15883875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 15898988 - 15899054
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  15898988 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 15899054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 3065464 - 3065428
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3065464 ttgttgatttctggctttgaaaccgaaaataaatcgg 3065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 4882750 - 4882684
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  4882750 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 4882684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 19629228 - 19629294
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  19629228 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 19629294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 20830112 - 20830046
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  20830112 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 20830046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 20847016 - 20846950
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  20847016 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 20846950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 17631056 - 17631012
Alignment:
Q  84 tgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||    
T  17631056 tgatgctgcttgttgatttcttgcttt-aaaccgaaaataaatcgg 17631012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 21480106 - 21480040
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| |||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||    
T  21480106 atcttcggaaacacttgaatctggttctgcttgttgatttcttgctttaaaaccgaaaataaatcgg 21480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9187371 - 9187408
Alignment:
Q  16 tgaagtttatgtgttacctgaggttttaatcggagatt 53  Q
    |||||||||||||||||||| |||||||||||||||||    
T  9187371 tgaagtttatgtgttacctgtggttttaatcggagatt 9187408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 12804 - 12843
Alignment:
Q  90 tgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  12804 tgtttgttgatttctggctttgaaaccgaaaataaatcgg 12843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 13272 - 13387
Alignment:
Q  13 agatgaagtttatgtgttacctgaggttttaatcggagattcgaactcgaatcttcggaaaaacttgagtct--gatcctgtttgttgatttcttgcttt 110  Q
    |||||||||||| || ||||||||| |||||||||||||||   ||  || ||||||||||||||||| |||  | ||   ||||||||||  ||||||     
T  13272 agatgaagtttaagttttacctgagtttttaatcggagatt-tcacgagattcttcggaaaaacttgattcttggctctgttttgttgatt--ttgcttg 13368  T
Q  111 gaaaccgaaaataaatcgg 129  Q
    |||||||||||||||||||    
T  13369 gaaaccgaaaataaatcgg 13387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 16681187 - 16681151
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16681187 ttgttgatttctggctttgaaaccgaaaataaatcgg 16681151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 23395938 - 23395902
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23395938 ttgttgatttctggctttgaaaccgaaaataaatcgg 23395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 30914488 - 30914527
Alignment:
Q  90 tgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  30914488 tgtttgttgctttctggctttgaaaccgaaaataaatcgg 30914527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 24613599 - 24613665
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  24613599 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 24613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 24673226 - 24673292
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  24673226 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 24673292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 24710000 - 24710066
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  24710000 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 24710066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 24742994 - 24743060
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  24742994 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 24743060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 24755764 - 24755830
Alignment:
Q  63 atcttcggaaaaacttgagtctgatcctgtttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||||| ||||||   |||| |||||||||||||| | | |||||| |||||||||||||||    
T  24755764 atcttcggaaacacttgaacttgattctgtttgttgatttttggatttgaatccgaaaataaatcgg 24755830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 28092 - 28059
Alignment:
Q  96 ttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    ||||||||| ||||||||||||||||||||||||    
T  28092 ttgatttctggctttgaaaccgaaaataaatcgg 28059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 13030 - 13065
Alignment:
Q  93 ttgttgatttcttgctttgaaaccgaaaataaatcgg 129  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13030 ttgttgatttcttgcttt-aaaccgaaaataaatcgg 13065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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