View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_high_49 (Length: 205)
Name: NF16486_high_49
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 37672492 - 37672663
Alignment:
| Q |
18 |
gttccaacaaactcttgttcaaactccaaaaatcatcttacctttacctttccatgaaagaaatcaacttcgtttctattcagttattgatatttataat |
117 |
Q |
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| T |
37672492 |
gttccaacaaactcttgttcaaactccaaaaatcatcttacctttacctttccatgaaagaaatcaacttcgtttctattcagttattgatatttataat |
37672591 |
T |
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| Q |
118 |
ggcccaagttttagcaaagactatctacctcttttgattcaacttggatttatttacactatccctcttcat |
189 |
Q |
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| T |
37672592 |
ggcccaagttttagcaaagactatctacctcttttgattcaacttggatttatttacactatccctcttcat |
37672663 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 26234936 - 26234982
Alignment:
| Q |
143 |
tacctcttttgattcaacttggatttatttacactatccctcttcat |
189 |
Q |
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| T |
26234936 |
tacctcttttgattcaacttggattcatttacactgtccctcttcat |
26234982 |
T |
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