View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_high_6 (Length: 496)
Name: NF16486_high_6
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 50707417 - 50706939
Alignment:
| Q |
1 |
tgaaagaagagaagaataatttacaagctgtaaaagagacaaacaagagtagttcatgccttccttcttggtgggatcattctattgatgatatggcttt |
100 |
Q |
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| T |
50707417 |
tgaaagaagagaagaataatttacaagctgtaaaagagacaaacaacagtagttcatgccttccttcttggtgggatcattctattgatgatatggcttt |
50707318 |
T |
|
| Q |
101 |
ggcatctcttgagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagggaaagagattcacatgaattcatgttcctcg |
200 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50707317 |
ggaatctcttaagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagggaaagagattcacatgaattcatgttcctcg |
50707218 |
T |
|
| Q |
201 |
tcaacttccaatattatataactattcaatcttcaataacactacaaacaggtgtgataggaggagaggtcttagtagcagtgctag----nnnnnnnnn |
296 |
Q |
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| T |
50707217 |
tcaacttccaatattatataactattcaatcttcaataacactacaaacaggtgtgataggaagagaggtcttagtagtagtgctagttttttttttttt |
50707118 |
T |
|
| Q |
297 |
nnnnnagagaaaagataatagtagtgctagttttatggttcctgattttggacactataggcatgaattgctatattagttttggttgggtgggtagcat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50707117 |
tttttagagaaaagataatagtagtgctagttttatggttcctgattttggacactataggcatgaattgctatattagttttggttgggt-agtagcat |
50707019 |
T |
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| Q |
397 |
atttcaatttgtttaaagttttttcgtatgttcgatgtcaacattctcttcaaaaataaaatatattatgtgtttatgtt |
476 |
Q |
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| T |
50707018 |
atttcaatttgtttaaagttttttcgtatgttcgatgtcaacattctctttaaaaataaaatatattatgtgtttatgtt |
50706939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8167347 - 8167179
Alignment:
| Q |
1 |
tgaaagaagagaagaataatttacaagctgtaaaagagacaaacaagagtagttcatgccttccttcttggtgggatcattctattgatgatatggcttt |
100 |
Q |
| |
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||||||||||||| ||| ||||| ||| ||||||||||| |||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||| |
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| T |
8167347 |
tgaaagaagagaataattatttagaaggtgtaaaagagagaaacaagagtagttcatgtttttcttgctggtggggtcattctattgatgatatggcttt |
8167248 |
T |
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| Q |
101 |
ggcatctcttgagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagg |
169 |
Q |
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| T |
8167247 |
ggaatctcttgagcaatttaagacttctttggtaaaattgaagcttaatttagatgcatccttgcaagg |
8167179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 19588076 - 19588120
Alignment:
| Q |
68 |
ttggtgggatcattctattgatgatatggctttggcatctcttga |
112 |
Q |
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||||||| || |||||||||||||||||| ||| ||||||||||| |
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| T |
19588076 |
ttggtggaataattctattgatgatatggatttagcatctcttga |
19588120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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