View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_high_9 (Length: 445)
Name: NF16486_high_9
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 45279915 - 45279475
Alignment:
| Q |
1 |
tatttgcagtttgagaataatcttttttccacacagatgcatgcataaattaccggctcaaaacaacaattgactacttattaaattctgtttcaggaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45279915 |
tatttgcagtttgagaataatcttttttccacatagatgcatgcataaattactggctcaaaataacaattgactacttattaaattctgtttcaggaaa |
45279816 |
T |
|
| Q |
101 |
aactcagaaatcattaccagatctacttagggagcacaaccttcctccaggtctgttcccccgtaatataacatgctacgagtttgatgaatcaaaagga |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45279815 |
aactcagaaatcattaccagatctccttagggagcacaaccttcctccaggtctgttcccccgtaatataacatgctacgaatttgatgaatcaaaagga |
45279716 |
T |
|
| Q |
201 |
aagttgatggtgcatttgtcctgcccttctgaggtatgcttcaaggactcgtctattgtgagatattcaaatcgcgtcaaaggaacattgtcaaagggaa |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279715 |
aagttgatggtgcatttgtcctccccttctgaggtatgcttcaaggactcgtctattgtgagatattcaaatcgcgtcaaaggaacattgtcaaagggaa |
45279616 |
T |
|
| Q |
301 |
aactcattgttatagatggaatgaagaccaaggttcttgtgtgggttaaggtcactagtgtttatgttgagagttataagtctgacaaagtatggtttac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279615 |
aactcattgttatagatggaatgaagaccaaggttcttgtgtgggttaaggtcactagtgtttatgttgagagttataagtctgacaaagtatggtttac |
45279516 |
T |
|
| Q |
401 |
taccactggtgttaaaaaatcaaggcctaaagatgcctatg |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279515 |
taccactggtgttaaaaaatcaaggcctaaagatgcctatg |
45279475 |
T |
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