View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16486_low_13 (Length: 415)

Name: NF16486_low_13
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16486_low_13
NF16486_low_13
[»] scaffold0683 (1 HSPs)
scaffold0683 (188-415)||(4884-5116)
[»] scaffold0483 (1 HSPs)
scaffold0483 (12-107)||(2434-2524)
[»] scaffold0109 (1 HSPs)
scaffold0109 (12-107)||(47221-47311)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-107)||(124881-124971)
[»] chr8 (2 HSPs)
chr8 (12-107)||(30867786-30867876)
chr8 (12-107)||(34207660-34207750)
[»] chr6 (3 HSPs)
chr6 (12-107)||(14646542-14646632)
chr6 (12-107)||(16315153-16315243)
chr6 (12-76)||(12760252-12760313)
[»] chr3 (3 HSPs)
chr3 (12-96)||(54709818-54709899)
chr3 (12-96)||(21665298-21665379)
chr3 (222-302)||(42779290-42779376)
[»] chr4 (1 HSPs)
chr4 (14-107)||(14693032-14693120)
[»] scaffold0150 (1 HSPs)
scaffold0150 (12-107)||(2917-3007)
[»] scaffold0623 (3 HSPs)
scaffold0623 (31-107)||(5678-5752)
scaffold0623 (12-107)||(4992-5082)
scaffold0623 (12-107)||(9090-9180)
[»] chr7 (1 HSPs)
chr7 (12-107)||(14184543-14184633)


Alignment Details
Target: scaffold0683 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 188 - 415
Target Start/End: Complemental strand, 5116 - 4884
Alignment:
Q  188 tttctattgaattgcgtgtttggtgcattgagctttccaaataataagcattatggtcacttttcagcaagga-----taaaaaatatccctaaatccac 282  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||    
T  5116 tttctattgaattgtgtgtttggtgcattgagctttcctaataataagcattatggtcacctttcagcaaggaacttctaaaaaatatccctaaatccac 5017  T
Q  283 atttgtaatatccagtttactacaacagtattagcgtaacaacaacagcacaccagtaagtcccaaccccatattccatacaagcacaaatataatagat 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5016 atttgtaatatccagtttactacaacagtattagcgtaacaacaacagcacaccagtaagtcccaaccccatattccatacaagcacaaatataatagat 4917  T
Q  383 ggcatcataagattttccttaacatggctcttc 415  Q
    |||||||||||||||||||| ||||||||||||    
T  4916 ggcatcataagattttccttgacatggctcttc 4884  T

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Target: scaffold0483 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 2434 - 2524
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  2434 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 2524  T

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Target: scaffold0109 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 47221 - 47311
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  47221 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 47311  T

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Target: scaffold0018 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 124881 - 124971
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  124881 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 124971  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 30867876 - 30867786
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  30867876 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 30867786  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 34207660 - 34207750
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  34207660 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 34207750  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 14646542 - 14646632
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  14646542 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 14646632  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 16315243 - 16315153
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  16315243 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 16315153  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12760313 - 12760252
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaat 76  Q
    ||||||||||||||||||||   || ||||||||||||||||||| |||||||||||||||||||    
T  12760313 tcatcacaaagtacccgcaa---tctataccattttcttggcgagaacactacaaaaaataaaat 12760252  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 54709818 - 54709899
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaa 96  Q
    ||||||||||||||||   |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54709818 tcatcacaaagtaccc---acaatttataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaa 54709899  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 21665298 - 21665379
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaa 96  Q
    ||||||||||||||||   |||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21665298 tcatcacaaagtaccc---acaatttataccatttttttggcgaggacactacaaaaaataaaataagtaattgtagcaataaaa 21665379  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 42779376 - 42779290
Alignment:
Q  222 ttccaaataataagcattatggtcacttttc-agcaagga-----taaaaaatatccctaaatccacatttgtaatatccagtttac 302  Q
    |||| |||||||||| ||| ||||||||||| ||||||||     |||| |||||||| || |||||||||||||||||||||||||    
T  42779376 ttcctaataataagcgttacggtcacttttccagcaaggaactagtaaataatatccccaattccacatttgtaatatccagtttac 42779290  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 14693032 - 14693120
Alignment:
Q  14 atcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  14693032 atcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaaaataaaataagt--ttgtataaataaaattatttatatt 14693120  T

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Target: scaffold0150 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 3007 - 2917
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||  |||||| ||||||||||||||||||    
T  3007 tcatcacaaagtacccgcaa---tctataccattttcttggcgaggacactacaaaatataaaataagt--ttgtataaataaaattatttatatt 2917  T

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Target: scaffold0623 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 5678 - 5752
Alignment:
Q  31 acaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  5678 acaatctataccatttttttggcgaggacactacaaaaaataaaataagt--ttgtatcaataaaattatttatatt 5752  T

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Target: scaffold0623; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 4992 - 5082
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   || |||||||||||||| ||||||||||||||| ||||||||||||  |||||||||| ||||||||||||||    
T  4992 tcatcacaaagtacccgcaa---tctataccattttcttgacgaggacactacaaacaataaaataagt--ttgtatcaattaaattatttatatt 5082  T

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Target: scaffold0623; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 9090 - 9180
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    |||||||||| |||||||||   || |||||||||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||||||||||    
T  9090 tcatcacaaaatacccgcaa---tctataccattttcttggcgaggacactacaaacaataaaataagt--ttgtatcaattaaattatttatatt 9180  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 14184543 - 14184633
Alignment:
Q  12 tcatcacaaagtacccgcaacaatccataccattttcttggcgaggacactacaaaaaataaaataagtaattgtatcaataaaattatttatatt 107  Q
    ||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||| ||||||||    
T  14184543 tcatcacaaagtacccgcaa---tttataccattttcttggcgaggacactacaaaaaataaaataa--atttgtatcaatcaaattgtttatatt 14184633  T

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