View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_14 (Length: 398)
Name: NF16486_low_14
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 38 - 391
Target Start/End: Complemental strand, 595795 - 595442
Alignment:
| Q |
38 |
tgtaaagagcgaaaaggaagatttgattgatattgaacaccaaaagctgctacctttgaagaaatttccagcactctgcgaaaaggaaatggcatacctt |
137 |
Q |
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| T |
595795 |
tgtaaagagcgaaaaggaagatttgattgatattgaacaccaaaagctgctacctttgaagaaatttccagcactctgcgaaaaggaaatggcatacctt |
595696 |
T |
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| Q |
138 |
taattcaattgaatattcataatcacattatcaatagacgtagaaactaaagtagacgactcttgaattctcactgctctgtcaacaaactaaaatcaag |
237 |
Q |
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| T |
595695 |
taattcaattgaatattcataatcacattatcaatagacgtagaaactaaagtagacgactcttgaattctcactgctctgtcaacaaactaaaatcaag |
595596 |
T |
|
| Q |
238 |
caaagcattcaagacagtaatccatttttgctatgattggtaaaatagtactaaaattagtttgagcaataacaaagcctatgtattattccccttgtcc |
337 |
Q |
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| T |
595595 |
caaagcaatcaagacagtaatccatttttgctatgattggtaaaatagtactaaaattagtttgaacaataacaaagcctatgtattattccccttgtcc |
595496 |
T |
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| Q |
338 |
tgttatgtactaaatttgcatccttcttttttatttgtttctgtttctctgctc |
391 |
Q |
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| T |
595495 |
tgttatgtactaaatttgcatccttcttttttatttgtttctgtttctctgctc |
595442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 23962328 - 23962413
Alignment:
| Q |
55 |
aagatttgattgatattgaacaccaaaagctgctacctttgaagaaatttccagcactctgcgaaaaggaaatggcatacctttaa |
140 |
Q |
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| T |
23962328 |
aagacttgattgatattgaacatcaaaagctactaccttcgaagaagtttccaacaccgcacgaaaagacaatgacatacctttaa |
23962413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 4590129 - 4590038
Alignment:
| Q |
190 |
tagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaa |
281 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||||| |||| |||||||||| ||||| ||| |||| |||||||||||||||| |
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| T |
4590129 |
tagacgactctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa |
4590038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 4603770 - 4603679
Alignment:
| Q |
193 |
acgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaaata |
284 |
Q |
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|||| ||| |||||||||||| ||||| ||||| ||||| |||| |||||||||| || |||||| | || ||||||||||||||||||| |
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| T |
4603770 |
acgattctcgaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaata |
4603679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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