View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_15 (Length: 382)
Name: NF16486_low_15
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 6545084 - 6545432
Alignment:
| Q |
19 |
attacttacttgacttaggaggcacaacaaagattgcaactgatttctcccaacagaatctccaacaaaaaccattttctttcctctaacaatctctaag |
118 |
Q |
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| T |
6545084 |
attacttacttgacttaggaggcacaacaaagattgcaactgatttctcccaacagaatctccaacaaaaaccattttctttcctctaacaatctctaag |
6545183 |
T |
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| Q |
119 |
aattgagttgcattaaacaatggaagctcgcaatcgtttggtttccatctccaatgaagatactcatcgtccggcctaccaaacttcatgcagttttgtt |
218 |
Q |
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| T |
6545184 |
aattgagttgcattaaacaacggaagctcgcattcgtttggtttccatctccaatgaagatactcatcgtccggcctaccaaacttcatgcagttttgtt |
6545283 |
T |
|
| Q |
219 |
catctatcatccatttgcatgtttcattgttatagtaaggtccttcagaatgaggaatccaactacctgaaaagatgtcacatccttttgtatgtgtttt |
318 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6545284 |
catctatcatccatttgcatgtttcattgttgtaataaggtccttcagaatgaggaatccaactacctgaaaagatgtcacatccttttgtatgtgtttt |
6545383 |
T |
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| Q |
319 |
gttgttcatgtgtttgacagaagacatgtttggtgatggttcatctgtg |
367 |
Q |
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| T |
6545384 |
gttattcatgtgttggacagaagacatgtttggagatggttcatctgtg |
6545432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 6557790 - 6557842
Alignment:
| Q |
59 |
tgatttctcccaacagaatctccaacaaaaaccattttctttcctctaacaat |
111 |
Q |
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| T |
6557790 |
tgatttctaccaacagaatctccaacaaaagccatagattttcctctaacaat |
6557842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 4839186 - 4839298
Alignment:
| Q |
59 |
tgatttctcccaacagaatctccaacaaaaaccattttctttcctctaacaatctctaagaattgagttgcattaaacaatggaagctcgcaatcgtttg |
158 |
Q |
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||||||||||||| ||| || || |||||| ||||| |||||| ||||||||| || || |||||||||| |||||| ||||| || |||| | | |
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| T |
4839186 |
tgatttctcccaatagagtcaccgacaaaagccattgactttcccttaacaatcttgaaaaactgagttgcatcaaacaaaggaagttcacaattatcag |
4839285 |
T |
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| Q |
159 |
gtttccatctcca |
171 |
Q |
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| T |
4839286 |
gtttccatctcca |
4839298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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