View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_18 (Length: 359)
Name: NF16486_low_18
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 2761689 - 2761333
Alignment:
| Q |
2 |
ccaaattcaacacgttcacttatcattcaaggaaatcacaagttctataaattggaatgatttgtagccaatttattccatgcaaatactcttacttaca |
101 |
Q |
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| T |
2761689 |
ccaaattcaatacgttcacttatcattcaaggaaatcacaagttctataaattggaattatttgtagccaatttattccatgcaaatactcttacttaca |
2761590 |
T |
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| Q |
102 |
caatggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgagggtgcaggaaaagagaaagatgg |
201 |
Q |
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| T |
2761589 |
caatggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgaaggtgcaggaaaagagaaagatgt |
2761490 |
T |
|
| Q |
202 |
tggtgttgacgacatatctaaaaagtttggggaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcg |
301 |
Q |
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| T |
2761489 |
tggtgttgacgacatatctaaaaagtttgggcaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcg |
2761390 |
T |
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| Q |
302 |
tactctacgttttgtcttcatcatgaaactaccgcagctactactactgctactcct |
358 |
Q |
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| T |
2761389 |
tactctacgttttgtcttcatcatgaaactaccgcagctactactactactactcct |
2761333 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 11952641 - 11952570
Alignment:
| Q |
16 |
ttcacttatcattcaaggaaatcacaagttctataaattggaatgatttgtagccaatttattccatgcaaa |
87 |
Q |
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| T |
11952641 |
ttcacttctcatttaaggaaatcactagttctataaattagactaatttagagcccttttattccatgcaaa |
11952570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 41814495 - 41814414
Alignment:
| Q |
104 |
atggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgagggtgcag |
185 |
Q |
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| T |
41814495 |
atggcaaaaatcatcactacttcattgattttagttctccttgttgtggcaattatcaatgattgtagtgttgagggtgcag |
41814414 |
T |
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