View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16486_low_19 (Length: 355)
Name: NF16486_low_19
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 43029469 - 43029141
Alignment:
| Q |
12 |
atgaagccttggaatgctattcacactgttgttattgctgttgatgttattgaagaaactattactatggctgctgaaattagcaaaccaaatagggata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029469 |
atgaagccttggaatgctattcacactgttgttattgctgttgatgttattgaagaaactattactatggctgctgaaattagcaaaccaaatagggata |
43029370 |
T |
|
| Q |
112 |
gttacggttgatcttttcaatttcttgtgatccctaatggtttcagtttcatgatcagaaaatggattaaggatccatgttgaagtagcactgttttcta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029369 |
gttacggttgatcttttcaatttcttgtgatccctaatggtttcagtttcatgatcagaaaatggattaaggatccatgttgaagtagcactgttttcta |
43029270 |
T |
|
| Q |
212 |
aaataggcaaatttggatataaagaagcatagtaagaacccattaatgatggattttcatctacctcgcatttgaaggtactagcataaagtgcaggtga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43029269 |
aaataggcaaatttggatataaagaagcatagtaagaacccattaatgatggattttcatctacctcacatttgaaggtactagcataaagtgcaggtga |
43029170 |
T |
|
| Q |
312 |
catattaatttctcaattaatgtctataa |
340 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43029169 |
catattaatttctcaattaatgtctataa |
43029141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University