View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_22 (Length: 346)
Name: NF16486_low_22
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 27693754 - 27693415
Alignment:
| Q |
12 |
gagatgaaggtaattatgagtagctgggatggaaagctgaaatgtaatagcagcaagtgtcgttatccagatgtatacagggagtatgtcaacggaattg |
111 |
Q |
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| T |
27693754 |
gagatgaaggtaattatgagtagctgggatggaaagctgaaatgtaatagcagcaagtgtggttatccagatgtatacagggagtatgtcaacggaattg |
27693655 |
T |
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| Q |
112 |
agcttcgttggcgaccaaaacgctgtgaacagcatcagcaagacagagaccgtgaccgggaagaggaacaattgtcataccgcagcatgatatacgatac |
211 |
Q |
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| T |
27693654 |
agcttcgttggcgaccaaaacgctgtgaacagcatcagcaagacagagaccgtgaccgggaagaggaacaattgtcataccccagcatgatatacgatac |
27693555 |
T |
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| Q |
212 |
agcagtgcgcgctctatttctcttcattctcttgcgtaagtnnnnnnnnnnncgcactagatacacatttagttaaaagaca-----cttctatcatatg |
306 |
Q |
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|||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27693554 |
agcaatgggcgctctatttttcttcattctcttgcgtaagtaaaaaaaaaaacgcactagatacacatttagttaaaagacacttagcttctatcatatg |
27693455 |
T |
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| Q |
307 |
cattggtttatttattttacttaaatgcatttcaatactt |
346 |
Q |
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| T |
27693454 |
cattggtttatttattttacttaaatgcatttcaatactt |
27693415 |
T |
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