View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_24 (Length: 336)
Name: NF16486_low_24
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 3345451 - 3345763
Alignment:
| Q |
6 |
aggagcagagagagtattgcattcacaaagaatgtgctcagactttgaaattaatgtgaaaattacaaacatgctacacatttttgtgtttacttcaact |
105 |
Q |
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| T |
3345451 |
aggaccagagagagtattgcattcacaaagaatgtgcttagactttgaaattaatgtgaaaattacaaacatgctacacatttttgtgtttacttcaact |
3345550 |
T |
|
| Q |
106 |
agaattaaagctcaaggaaaaatgcatgacaatatcaacaacgttatgttaatatgaaagtaaatagaactagttgaacattaattgataatatgcacca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3345551 |
agaattaaagctcaaggaaaaatgcatgacaatatcaacaacattatgttaatatgaaagtaaatagaactagttgaacattaattgataatatgcacca |
3345650 |
T |
|
| Q |
206 |
aatcaattaatattagctatacttctcttaattgcaatccataaatttcaaagagagtgagttagcatacataccatggttataagtgtcttattgatga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3345651 |
aatcaattaatattagctatacttctcttaattgcaatccataaatttcaaagagagtgagttagcatacataccatggttataagtgtcttattgatga |
3345750 |
T |
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| Q |
306 |
gtgaagttggtag |
318 |
Q |
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||||||||||||| |
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| T |
3345751 |
gtgaagttggtag |
3345763 |
T |
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