View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_27 (Length: 304)
Name: NF16486_low_27
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 8405658 - 8405946
Alignment:
| Q |
1 |
cataggcagagggacgggttaagtgagcatgatctaatattaagcttagacctactcatggctagcatgctcggtcggttagataagactccaaccgtaa |
100 |
Q |
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| T |
8405658 |
cataggcagagggacgggttaagtgagcatgatctaatattaagcttagacctactcatggctagcatgctcggtcggttagataagactccaactgtaa |
8405757 |
T |
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| Q |
101 |
aataccatttccatacagagttgtg--tccattccatgtccctcacctaattattgtcaatcatgggagaatatttgttggggatcatacgcctaaatta |
198 |
Q |
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| T |
8405758 |
aagaccatttccatacagagttgtgtgtccattccatgtccctcacctaattattgttaatcatgggagaatatatgttggggatcatacgcctaaatta |
8405857 |
T |
|
| Q |
199 |
gggtttgacctaacaaaagggataagtccaaaccttggaaatgtaacgtttataaaagcataaagggtagagagataatggtacacttc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8405858 |
gggtttgacctaacaaaagggataagtccaaaccttggaaatgtaacgtttataaaagcataaagggtagagagataacggtacacttc |
8405946 |
T |
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