View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_28 (Length: 294)
Name: NF16486_low_28
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 9728837 - 9729105
Alignment:
| Q |
18 |
ctaatggcactatatagcatagcctacccaacnnnnnnnnnnnnggatatttacaaaaagagtacctaaaatccaacttcatgtagtccataattttgaa |
117 |
Q |
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| T |
9728837 |
ctaatggcactatatagcatagcctacccaacaaaaaaaaaaa-ggatatttacaaaaagagtacctaaaatccaacttcatgtagtccataattttgaa |
9728935 |
T |
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| Q |
118 |
gttgtaatgttaaaattccataaaatcaagcactccatttcccttctcaaacc--nnnnnnnnnnnnnnnnnngtgacatgtttgttaagtcacatgaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
9728936 |
gttgtaatgttaaaattccataaaatcaagcactccatttcccttctcaaaccaaaaaaaaaaaaaaaaaaaagtgacatgtttgttaagtcacatgagt |
9729035 |
T |
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| Q |
216 |
ttgttgattctcatccctattctgtgaatctagactcaacaatgtctcttcaatctctaatgaagaatta |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9729036 |
ttgttgattctcatccctattctgtgaatctagactcaacaatgtctcttcaatctctaatgaagaatta |
9729105 |
T |
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