View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_34 (Length: 259)
Name: NF16486_low_34
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 49248369 - 49248127
Alignment:
| Q |
15 |
cagagaataagaacgtacaatgcatgttcaagcttgacaacatgattaatactactttgtaacattgtcaaatagaaaacatcctcaattatatattgaa |
114 |
Q |
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| T |
49248369 |
cagagaataagaacgtacaatgcatgttcaagcttgacaacatgattaatactactttgtaacattgtcaaatagaaaacatcctcaattatatattgaa |
49248270 |
T |
|
| Q |
115 |
gttgctacttctgtattatctccatccagtttcgattcttcattgtccctgcatcacaaacatgtttcaattaaagttattaaaaaattgactaattaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49248269 |
gttgctacttctgtattatctccatccagtttcgattcttcattgtccctgcatcagaaacatgtttcaattaaagttattaaaaaattgactaattaat |
49248170 |
T |
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| Q |
215 |
accatatatgttact-cctccttcccaaattgtatgtcacttt |
256 |
Q |
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||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
49248169 |
accatatatgttactccctccttcacaaattgtatgtcccttt |
49248127 |
T |
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