View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_36 (Length: 256)
Name: NF16486_low_36
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 55825490 - 55825714
Alignment:
| Q |
18 |
cctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtagaaaaaacattggcatcc |
117 |
Q |
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| T |
55825490 |
cctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtagaaaa--cattggcatcc |
55825587 |
T |
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| Q |
118 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825588 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
55825687 |
T |
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| Q |
218 |
catcttgctctttcttcacttgtttca |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55825688 |
catcttgctctttcttcacttgtttca |
55825714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 56149491 - 56149267
Alignment:
| Q |
18 |
cctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtagaaaaaacattggcatcc |
117 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
56149491 |
cctttctgctcatctcttctgcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtagaaaa--cattggcatcc |
56149394 |
T |
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| Q |
118 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149393 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcatttcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
56149294 |
T |
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| Q |
218 |
catcttgctctttcttcacttgtttca |
244 |
Q |
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| T |
56149293 |
catcttgctctttcttcacttgtttca |
56149267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 9883816 - 9883755
Alignment:
| Q |
180 |
agcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtt |
241 |
Q |
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||||||| |||| |||||||||| ||| |||||||| || ||||| |||||||||||||||| |
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| T |
9883816 |
agcaagagcttccgctgcttgttccttctccttaagctcctcttgttctttcttcacttgtt |
9883755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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