View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16486_low_39 (Length: 251)

Name: NF16486_low_39
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16486_low_39
NF16486_low_39
[»] chr7 (16 HSPs)
chr7 (21-191)||(23840585-23840757)
chr7 (21-191)||(23844033-23844205)
chr7 (21-190)||(23864831-23865002)
chr7 (24-190)||(23861237-23861405)
chr7 (21-190)||(23857268-23857439)
chr7 (19-190)||(23817442-23817615)
chr7 (19-190)||(23791695-23791868)
chr7 (19-190)||(23802490-23802663)
chr7 (35-190)||(23838049-23838206)
chr7 (19-137)||(23797963-23798083)
chr7 (21-190)||(23852914-23853085)
chr7 (19-190)||(23807958-23808131)
chr7 (30-190)||(23855298-23855460)
chr7 (19-190)||(23823128-23823301)
chr7 (28-190)||(23828102-23828266)
chr7 (21-190)||(23849043-23849214)
[»] chr4 (1 HSPs)
chr4 (145-188)||(6273702-6273745)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 23840757 - 23840585
Alignment:
Q  21 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||| ||||| |    
T  23840757 ccagttcataagaaggttccagtttttgttcacaatgataagcccatttcagaatctcttgtgattcttgagtacattgatgaggtttggaagcaaaacc 23840658  T
Q  119 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 191  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23840657 ccattttgccaactgatccacaccaaagagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 23840585  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 23844205 - 23844033
Alignment:
Q  21 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatc 118  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |  |||||||||||||||||||||||||||||||| ||||| |    
T  23844205 ccagttcataagaaggttccagtttttgttcacaatgagaaacctatatcagaatcccttgtgattcttgagtacattgatgaggtttggaagcaaaacc 23844106  T
Q  119 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 191  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  23844105 ctattttgccttctgatccacaccaaagagccttggctcgattttggtcaaaattcatcgatgacaaggtaac 23844033  T

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Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 23865002 - 23864831
Alignment:
Q  21 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatc 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||    
T  23865002 ccagttcataagaaggttccagtttttgttcacaatgagaagcctatatcagaatctcttgtgattcttcagtatattgatgaggtttggaaacaaaatc 23864903  T
Q  119 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    ||||||| || || |||||| |||||||| | ||||||||||||||||| || |||||||||||||||||||    
T  23864902 ccattttaccgtccgatccataccaaaaatcattggctcgattttggtccaagttcatcgatgacaaggtaa 23864831  T

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Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 23861405 - 23861237
Alignment:
Q  24 gttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatccca 121  Q
    |||||||||||  |||||||| ||||||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  23861405 gttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatccca 23861306  T
Q  122 ttttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    ||||| | ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  23861305 ttttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 23861237  T

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Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 23857439 - 23857268
Alignment:
Q  21 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgt--gattcttgagtacattgatgaggtttggaaacaaaatc 118  Q
    |||||| |||| ||| | |||||||||||||||||||| |||||||||||||| || | |  |||| ||||||| |||||||||  ||||||||||||||    
T  23857439 ccagtttataaaaagataccagtttttgttcacaatgaaaagcctatatcagagtcccttttgattattgagtatattgatgagacttggaaacaaaatc 23857340  T
Q  119 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    | || ||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||    
T  23857339 ctatcttgccttctgatccataccaaagagccttggctcgattttggtctaacttcatcgacgacaaggtaa 23857268  T

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Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 23817615 - 23817442
Alignment:
Q  19 acccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaa 116  Q
    |||| ||| ||||||||||||| |||||| |||| ||||||||||||||| |||| || |  ||||||||||| || |||||||||  ||||||||||||    
T  23817615 accctgtttataagaaggttcctgtttttattcataatgataagcctatagcagagtcacttgtgattcttgaatatattgatgagacttggaaacaaaa 23817516  T
Q  117 tcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    ||| || ||||||||||||||| |||||| |||||||| |||||||||||| ||  |||| |||||||||||||    
T  23817515 tccaatattgccttctgatccataccaaagagccttggttcgattttggtccaacctcatagatgacaaggtaa 23817442  T

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Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 23791868 - 23791695
Alignment:
Q  19 acccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaa 116  Q
    |||| ||| ||||||||||||| || || ||||| ||||||||||| ||||||||||| |  |||||||||||||| |||||||||  ||||||||||||    
T  23791868 accctgtttataagaaggttcctgtgttagttcataatgataagcccatatcagaatcccttgtgattcttgagtatattgatgagacttggaaacaaaa 23791769  T
Q  117 tcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    ||| || ||||||||||||||  || ||| |||||||||||| || ||| | || ||||| ||||| |||||||    
T  23791768 tcctatcttgccttctgatccttacgaaagagccttggctcgtttctggaccaagttcatagatgataaggtaa 23791695  T

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Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 23802663 - 23802490
Alignment:
Q  19 acccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaa 116  Q
    |||| ||| ||||||| ||||| |||||| |||| ||||||||||| |||||||| || |  ||||||||||| || |||||||||  ||||||||||||    
T  23802663 accctgtttataagaaagttcctgtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatgagacttggaaacaaaa 23802564  T
Q  117 tcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    |||||| ||||||||||||||   | ||| |||||||||||| || ||||| || ||||| ||||| |||||||    
T  23802563 tcccatattgccttctgatccttccaaaagagccttggctcgtttctggtccaatttcattgatgataaggtaa 23802490  T

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Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 23838049 - 23838206
Alignment:
Q  35 ggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatcccattttgccttct 132  Q
    |||||| ||||||||||| ||||  || || || ||||| |||||||  |||||||||||||| ||||||  ||||||||||||||| || |||||||||    
T  23838049 ggttcctgtttttgttcataatggaaatcccatctcagagtctcgtgtgattcttgagtacatcgatgagacttggaaacaaaatcctatcttgccttct 23838148  T
Q  133 gatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    |||||  | |||| |||||||||||| || ||||| || ||||| |||||||||||||    
T  23838149 gatccttatcaaagagccttggctcgtttctggtctaagttcattgatgacaaggtaa 23838206  T

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Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 23798083 - 23797963
Alignment:
Q  19 acccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaa 116  Q
    |||| ||| ||||||||||||| || || ||||| ||||||||||||||| |||||||||  |||||| |||| || |||||||||  ||||||||||||    
T  23798083 accctgtttataagaaggttcctgtattagttcataatgataagcctatagcagaatctcttgtgattattgaatatattgatgagacttggaaacaaaa 23797984  T
Q  117 tcccattttgccttctgatcc 137  Q
    ||| || ||||||||||||||    
T  23797983 tcctatcttgccttctgatcc 23797963  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 23852914 - 23853085
Alignment:
Q  21 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatc 118  Q
    |||||| | |||| |||||||||| ||||||| ||||  |||||||| |||||||| ||||  ||||||||||| |||||||||| |||||||||||| |    
T  23852914 ccagtttacaagatggttccagttcttgttcataatgggaagcctatttcagaatcacgtgtgattcttgagtatattgatgaggcttggaaacaaaacc 23853013  T
Q  119 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    | || |||||   ||||||  | |||| ||||||||  || |||||||| || ||||| |||||||||||||    
T  23853014 ctatcttgcccaatgatccttatcaaagagccttggaccgtttttggtctaagttcattgatgacaaggtaa 23853085  T

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Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 23808131 - 23807958
Alignment:
Q  19 acccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaa 116  Q
    |||| ||| ||||||| ||||| ||||| ||| | ||||| ||||| || || ||||| |  |||||||||||||| |||||||||  ||||||||||||    
T  23808131 accctgtttataagaaagttcctgttttagtttataatgacaagcccatctctgaatcacttgtgattcttgagtatattgatgagacttggaaacaaaa 23808032  T
Q  117 tcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
     || || ||||||||||||||  | |||| |||| ||||||| || ||||| || ||||| |||||||||||||    
T  23808031 ccctatcttgccttctgatccttatcaaagagccatggctcgtttctggtccaatttcattgatgacaaggtaa 23807958  T

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Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 23855298 - 23855460
Alignment:
Q  30 aagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatcccattttgc 127  Q
    |||| |||||| ||| ||||||||||||| |||||  | ||||| |||||||  ||||||||||| |||||||||  |||||||||||| || || ||||    
T  23855298 aagatggttcctgttcttgttcacaatgagaagcccgtttcagagtctcgtgtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgc 23855397  T
Q  128 cttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    ||||||||||  || ||| |||||||| ||| |||||| | || ||| | ||||| |||||||    
T  23855398 cttctgatccttacaaaagagccttggatcgcttttgggccaagttcctagatgagaaggtaa 23855460  T

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Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 23823301 - 23823128
Alignment:
Q  19 acccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaa 116  Q
    |||| ||| ||||||| ||||| || || ||||| |||||||| |||||| |||||||||  |||||| |||| || |||||||||  ||||||||||||    
T  23823301 accctgtttataagaaagttcctgtattagttcataatgataaacctatagcagaatctcttgtgattattgaatatattgatgagacttggaaacaaaa 23823202  T
Q  117 tcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    ||| || ||||||||||||||  |  ||| ||||||||| || || ||||| || || || ||||| |||||||    
T  23823201 tccaatcttgccttctgatccttataaaagagccttggcacgtttctggtccaagtttatagatgataaggtaa 23823128  T

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Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 23828266 - 23828102
Alignment:
Q  28 ataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaacaaaatcccatttt 125  Q
    |||| |||||||| || || ||||| ||||||||||| ||||||||||| |  ||||||||||||||  |||||||   |||||| |||||||| || ||    
T  23828266 ataaaaaggttcctgtattagttcataatgataagcccatatcagaatcccttgtgattcttgagtatgttgatgaaacttggaagcaaaatcctatctt 23828167  T
Q  126 gccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
     |||||||||||  || ||| |||||||||||| || ||| | || ||||| ||||| |||||||    
T  23828166 accttctgatccttacaaaagagccttggctcgtttctggacaaagttcatagatgataaggtaa 23828102  T

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Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 23849043 - 23849214
Alignment:
Q  21 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggtttggaaacaaaatc 118  Q
    |||||| ||| || |||||| ||| ||||||| ||||  || || ||||||||||||||||  ||| ||||||| ||||| |||| ||||||||| || |    
T  23849043 ccagtttataggatggttcctgttcttgttcataatgggaatcccatatcagaatctcgtgtgattattgagtatattgacgaggcttggaaacagaacc 23849142  T
Q  119 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 190  Q
    | || ||||||||||||||  || ||| ||| |||| ||| |||||||| || ||||| ||||| |||||||    
T  23849143 ctatcttgccttctgatccttacaaaagagctttggatcggttttggtcaaagttcattgatgaaaaggtaa 23849214  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 6273702 - 6273745
Alignment:
Q  145 aaagccttggctcgattttggtcgaaattcatcgatgacaaggt 188  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  6273702 aaagccttggctcgattttggtctagattcattgatgacaaggt 6273745  T

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