View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_4 (Length: 525)
Name: NF16486_low_4
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Original strand, 46177733 - 46178213
Alignment:
| Q |
8 |
aacaatgacaattttgtaatttcaacactcacatttt-tgattgaataagatctcacattttctccacatttgcaatgaaaggacgtatccatgattttc |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46177733 |
aacaatgacaattttgtaatttcaacactcactttttttgattgaataagatctcacattttctccacatttgcaatgaaaggacgtatccattattttc |
46177832 |
T |
|
| Q |
107 |
ctcctacttttgaatattaaaatgttgtgattgtactattttgttccacattttgtaaaagctaatatagaaaccattaagttagttaacttgcactgca |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46177833 |
ctccaacttttgaatattaaaatgttgtgattgtactattttgttccacattttgtaaaagctaatatagaaaccattaagttagttaacttgcactaca |
46177932 |
T |
|
| Q |
207 |
agttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaaccaaagctagctgttagttaggaggggatataggtgct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
46177933 |
agttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaaccacagctagttgttagttaggaggggatgtaggtgct |
46178032 |
T |
|
| Q |
307 |
atatatactctttctacactacttgtaatttcaattttgtttgaaataacataatgagaatagagttttcttcctccatcaatggagtttatgctttact |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46178033 |
atatatactctttctacactacttgtaatttcaattttgtttgaaataacataatgagaatagagttttcttcctccatcaatggagtttatgctttact |
46178132 |
T |
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| Q |
407 |
tttcacacat------tttccaaattccaatgactgtgattgtttaaaatttaaaagttcaggacacaaattacacaatca |
481 |
Q |
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| T |
46178133 |
tttcacacattttttgtttccaaattccaatgattgtgattgtttaaaatttaaaagttcaggacacaaattacacaatca |
46178213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 54722152 - 54722236
Alignment:
| Q |
186 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
271 |
Q |
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|||||||||||||||||| |||||||||| ||| |||||| |||||||| ||| ||||||||||||| | ||||||||||||| |
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| T |
54722152 |
agttagttaacttgcactacaagttaactgggatcttaactccttgtaaccgttttctaaccatgattacct-atagaagtaacca |
54722236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 54722353 - 54722397
Alignment:
| Q |
373 |
tttcttcctccatcaatggagtttatgctttacttttcacacatt |
417 |
Q |
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| T |
54722353 |
tttcttcctccatcaatggagtgtatgctatacttttcacacatt |
54722397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 21212676 - 21212644
Alignment:
| Q |
302 |
gtgctatatatactctttctacactacttgtaa |
334 |
Q |
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| T |
21212676 |
gtgctatatatactcttcctacactacttgtaa |
21212644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 186 - 379
Target Start/End: Complemental strand, 2673846 - 2673666
Alignment:
| Q |
186 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaaccaaagctagctgttag |
285 |
Q |
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|||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||| |||||||| | ||||||||||||| || |
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| T |
2673846 |
agttagttaacttgcactgcaagttaactaggtcgttaactacttgtaactgttttctaactatgattagat-atagaagtaacca-----------cag |
2673759 |
T |
|
| Q |
286 |
ttaggaggggatataggtgctatatatactctttctacactac-ttgtaatttcaattttgtttgaaataacataatgagaatagagttttcttc |
379 |
Q |
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|||||| ||||||||||||||||| |||| || ||||||||| ||||| ||| | |||||| ||||||| | |||||||||| |||||||||| |
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| T |
2673758 |
ttagga--ggatataggtgctatatgtactattgctacactactttgtatttttagttttgtgtgaaatattacaatgagaataaagttttcttc |
2673666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 5293748 - 5293832
Alignment:
| Q |
186 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
271 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||| | ||||||||||||| |
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| T |
5293748 |
agttagttaacttgcactacaagttaactaggatcttaactccttgtaaccgttttctaaccatgattacct-atagaagtaacca |
5293832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 5298300 - 5298384
Alignment:
| Q |
186 |
agttagttaacttgcactgcaagttaactaggaccttaaccacttgtaactgttgcctaaccatgattagttgatagaagtaacca |
271 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||| | ||||||||||||| |
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|
| T |
5298300 |
agttagttaacttgcactacaagttaactaggatcttaactccttgtaaccgttttctaaccatgattacct-atagaagtaacca |
5298384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 5293949 - 5293993
Alignment:
| Q |
373 |
tttcttcctccatcaatggagtttatgctttacttttcacacatt |
417 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
5293949 |
tttcttcctccatcaatggagtgtatgctatacttttcacacatt |
5293993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 5298501 - 5298545
Alignment:
| Q |
373 |
tttcttcctccatcaatggagtttatgctttacttttcacacatt |
417 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
5298501 |
tttcttcctccatcaatggagtgtatgctatacttttcacacatt |
5298545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 24812039 - 24812093
Alignment:
| Q |
359 |
aatgagaatagagttttcttcctccatcaatggagtttatgctttacttttcaca |
413 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||| |
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|
| T |
24812039 |
aatgagaataaagttttcttcctctatcaatggagtttatgctatacttctcaca |
24812093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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