View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_43 (Length: 245)
Name: NF16486_low_43
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45254662 - 45254432
Alignment:
| Q |
1 |
aaatctgcatgtttgactttacttgactgaaagatttgttgttcnnnnnnnnn--gctgcagaaagaggaatatcaagagaatatggctgtcccaggttc |
98 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45254662 |
aaatctgcatgtttgactttacttcactgaaagatttgttgttctttttttttttgctgcagaaagaggaatatcaagagaatatggctgtcccatgttc |
45254563 |
T |
|
| Q |
99 |
ttctaattctgggcagccacaattcatttccagcaccggaaacagaaacttttccaatgctccgcttattgactccacaaatactgatcaaattgttgtc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45254562 |
ttctaattctgggcagccacaattcatttccagcaccggaaacagaaacttttccaatgctccgcttattgactccacaaatactgatcaaattgttgtc |
45254463 |
T |
|
| Q |
199 |
ccagatgtgagtttgccttaattgtcattca |
229 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45254462 |
ccagatgtgagtttgccttaattgtcattca |
45254432 |
T |
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