View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_46 (Length: 236)
Name: NF16486_low_46
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 24455289 - 24455087
Alignment:
| Q |
18 |
aagaaacctgtccaaatttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaa-ttcaaatctagccacaccaccatccataaaataa |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24455289 |
aagaaacctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagcgtatgaatttcaaatctagccacaccaccatccataaaatac |
24455190 |
T |
|
| Q |
117 |
ggaagnnnnnnnnntaacataaagattgcaacctgcaaccatagtcaagtaagannnnnnnccatcaaacaaaacttgattttgatactcctgcttcatc |
216 |
Q |
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||||| ||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24455189 |
ggaagaaaaaaaaa-aacat-aagattgcaacctgcaaccacagtaaagtaagattttttcccatcaaacaaaacttgattttgatactcctgcttcatc |
24455092 |
T |
|
| Q |
217 |
ctatg |
221 |
Q |
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||||| |
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|
| T |
24455091 |
ctatg |
24455087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 1615400 - 1615500
Alignment:
| Q |
18 |
aagaaacctgtccaaatttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatccataaaataag |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1615400 |
aagaaacctgtccaattttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccataaaataag |
1615499 |
T |
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| Q |
118 |
g |
118 |
Q |
| |
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| |
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| T |
1615500 |
g |
1615500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 43227492 - 43227416
Alignment:
| Q |
44 |
tcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatccataaaataaggaa |
120 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43227492 |
tcatcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataaggaa |
43227416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
| Q |
36 |
tcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatccataaaataag |
117 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| | | |||| |||| ||||| | |||||||||||||||||||| |
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| T |
48909245 |
tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag |
48909326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
| Q |
40 |
cttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatcc |
107 |
Q |
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||||||||||||| ||||||||||||||||||| | |||||| |||||| |||||||||||||||| |
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| T |
35361052 |
cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc |
35361119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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